Gene detail

Detail information of GWHGAAZE001905

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	H2DH21.1C7A29_PANGI	0	RecName: Full=Cytochrome P450 CYP72A219; AltName: Full=Cytochrome P450 CYP72A129 [Panax ginseng]
COG	YP_004448498.1	3E-55	monooxygenase
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|A0A022QUQ9\|A0A022QUQ9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU31636.1}
TAIR10	AT3G14690.1	0	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	64295045	64301002	+
GWHAAZE00000001	mRNA	64295045	64301002	+
GWHAAZE00000001	exon	64295045	64295321	+
GWHAAZE00000001	exon	64298254	64298474	+
GWHAAZE00000001	exon	64299138	64299385	+
GWHAAZE00000001	exon	64299503	64299887	+
GWHAAZE00000001	exon	64300577	64301002	+
GWHAAZE00000001	five_prime_UTR	64295045	64295047	+
GWHAAZE00000001	CDS	64295048	64295321	+
GWHAAZE00000001	CDS	64298254	64298474	+
GWHAAZE00000001	CDS	64299138	64299385	+
GWHAAZE00000001	CDS	64299503	64299887	+
GWHAAZE00000001	CDS	64300577	64301002	+

Transcript Sequence
>GWHTAAZE001909 AATATGGAGACAATTTTGTATATTATTGGAGTTTGTAGTACAATTTATGTGGGAATATTGGTATGGAGAGTGTTGAATTGGGTGTGGTTAAGGCCAAGGAAGGTGGAGAAGTACTTGAGAGAACAAGGTCTAAAGGGAACTTCATACAGGCTACTTTTTGGAGACTTGAAACAGATGTCCCTCATGCGGAAAGAAGCCAAAACCAAGCCCATCAATCTCTCCGACGACGTCGCTCCTCGTGTCATGCCCTTCATCCACAAATCCTTTACCAACTATGGTAAGAATTTCTTTACATGGCTTGGACCAAAAGCAAATGTGCATATAATGGACCCTGATCTTATAAAGGACATATTGACTAGGAATAATATTTTTCAAAAGCCCAAGCGAGGAAATCCACTGGGCAGGTTGCTGGCAACTGGGCTTGTTCATTATGATGGTGACAAATGGACTAAACACAGAAAAATAATCAATCCAGCTTTCCATCTTGAGAAGCTCAAGTGTATGCTGCCAGCCTTTAAGTTGAGTTGTAGTGAGATGATTGGAAAATGGGAGGAAAGAGTACTCGAAAAAGGGTCGTCGTGTGAGTTGGATGTGTATCCTTACCTTCAAACATTGACTAGCGATGTGATTTCACGGACAGCATTTGGCAGCAGCTATGAAGAGGGAAGAAGAATATTTGAACTTCAAACAGAACAAGCCGAGCTAGTAATTCAAACTATCCAGACAGTTTATATTCCTGGATCTAGGTTTTTGCCCACAAAGAGATTCAACAGGATGAAGGAGATTGAGAAACAAGTTCAAGCTTCAATAAGGGGAATTATTAATAAAAGAGTTAAAGCAATGGAAGCTGGAGAAGCAAGTCAAGATGACTTATTGGGTATATTATTGGAATCCAATTTCAGAGAGATTCAAGAACATGGAAATAAAAGCTATGGAATGAATATTCATGACGTTGTTGAAGAGTGCAAACTATTCTACTTCGCTGGGCAGGAGACTACGTCTGGGTTGCTTGTGTGGACGATGATTCTACTGAGTCAATACCCATCTTGGCAAACTCGTGCCAGGGAAGAGGTTTTTCAGGTCTTTGGGGATACCAAACCAGATTTTGATGGCTTGAATCGCCTGAAAATTGTAAACATGATTTTTAACGAGGTTCTAAGGTTATACCCGCCTGGAGCTACACTAGGTCGAACTATTCACGAGGAAACTAAAATAGGAGAAATATCCATACCAGCTGGATCAATTCTCTCATTACCAATACTCCTAATTCATTATGACCGCGAACTATGGGGCGATGATGCTAATGAGTTCAAACCAGAGAGATTTGCTGAAGGAGTATCAAAAGTAACGAAGGGCCAAGTTTCATATTTCCCGTTTGGCTGGGGACCACGGATTTGCATTGGGCAAAATTTTGCAATGTTAGAAGCTAAAATGGCGATGGCTATGATACTACAACGCTTCTCCTTCGTGCTTTCGCCATCCTATGCACATGCTCCCCACACAATCATAACTCTTCAACCGCAACATGGTGCTTATTTAATTCTACAAAAGTTGTAG

Network for GWHGAAZE001905

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	84	493	2.20E-84
PF00352.22	TBP	24	103	3.70E-32
PF00352.22	TBP	112	221	4.20E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03120	TBP, tbp	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.395
	SRR3591706	second leaf	8.073
	SRR3591707	mature leaf	12.331
	SRR3591708	Shoot apex	3.365
	SRR3591709	Stem	10.260
	SRR3591710	White floral bud	23.642
	SRR3591711	White flower	82.651
	SRR3591712	Green floral bud	13.967
	SRR3591713	Yellow flower	60.421
SRP173429	SRR8316895	Juvenile bud stage	5.131
	SRR8316896	Juvenile bud stage	10.579
	SRR8316897	Juvenile bud stage	2.696
	SRR8316894	Third green stage	2.409
	SRR8316900	Third green stage	6.331
	SRR8316901	Third green stage	5.620
	SRR8316898	Complete white stage	2.414
	SRR8316899	Complete white stage	7.650
	SRR8316903	Complete white stage	3.510
	SRR8316902	Silver flowering stage	47.768
	SRR8316904	Silver flowering stage	59.249
	SRR8316905	Silver flowering stage	29.731
	SRR8316906	Gold flowering stage	125.674
	SRR8316907	Gold flowering stage	103.220
	SRR8316908	Gold flowering stage	119.866
SRP132670	SRR6706286	Control	5.420
	SRR6706287	Light intensity 50%	5.908
	SRR6706288	Light intensity 20%	5.418
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.157
	CNS0095593	Slightly white alabastrum(diploid) 2	8.337
	CNS0095594	Slightly white alabastrum(diploid) 3	10.125
	CNS0095595	Whole white alabastrum(diploid) 2	7.738
	CNS0095596	Whole white alabastrum(diploid) 3	3.536
	CNS0095597	Whole white alabastrum(diploid) 4	7.239
	CNS0095598	Silvery flower (diploied) 1	16.210
	CNS0095599	Silvery flower (diploied) 2	21.663
	CNS0095600	Silvery flower (diploied) 3	23.567
	CNS0095601	Golden flower (diploid) 1	16.069
	CNS0095602	Golden flower (diploid) 2	42.753
	CNS0095603	Golden flower (diploid) 3	40.896
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.045
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.931
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.858
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.034
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.982
	CNS0095610	Silvery flower (tetraploid) 1	45.700
	CNS0095611	Silvery flower (tetraploid) 2	30.595
	CNS0095612	Silvery flower (tetraploid) 3	13.947
	CNS0095613	Golden flower (tetraploid) 1	20.575
	CNS0095614	Golden flower (tetraploid) 2	43.884
	CNS0095615	Golden flower (tetraploid) 3	18.932
CRA001975	CRR073297	Stem 1	5.530
	CRR073298	Stem 2	7.034
	CRR073299	Stem 3	6.156
	CRR073300	Leaf 1	5.422
	CRR073301	Leaf 2	4.410
	CRR073302	Leaf 3	2.247
	CRR073303	Juvenile bud 1	1.660
	CRR073304	Juvenile bud 2	3.349
	CRR073305	Juvenile bud 3	2.166
	CRR073306	Third green 1	15.205
	CRR073307	Third green 2	11.569
	CRR073308	Third green 3	9.508
	CRR073309	Second white 1	18.399
	CRR073310	Second white 2	43.280
	CRR073311	Second white 3	19.238
	CRR073312	Silver flowering 1	11.238
	CRR073313	Silver flowering 2	8.686
	CRR073314	Silver flowering 3	7.030
	CRR073315	Gold flowering 1	40.525
	CRR073316	Gold flowering 2	54.044
	CRR073317	Gold flowering 3	22.025
	CRR073318	Tawny withering 1	25.016
	CRR073319	Tawny withering 2	15.911
	CRR073320	Tawny withering 3	21.748