Gene detail

Detail information of GWHGAAZE001898

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32489.1	6.1344E-105	hypothetical protein JCGZ_13414 [Jatropha curcas]
COG	YP_824350.1	1E-17	beta-N-acetylhexosaminidase
Swissprot	tr\|Q8L7S6\|HEXO3_ARATH	4E-96	Beta-hexosaminidase 3 (Precursor)
trEMBL	tr\|A0A067KKZ7\|A0A067KKZ7_JATCU	2E-105	Beta-hexosaminidase {ECO:0000256\|PIRNR:PIRNR001093}
TAIR10	AT1G65590.1	6E-80	beta-hexosaminidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63994033	63996881	+
GWHAAZE00000001	mRNA	63994033	63996881	+
GWHAAZE00000001	exon	63994033	63994157	+
GWHAAZE00000001	exon	63994235	63994294	+
GWHAAZE00000001	exon	63995656	63995906	+
GWHAAZE00000001	exon	63996405	63996881	+
GWHAAZE00000001	CDS	63994033	63994157	+
GWHAAZE00000001	CDS	63994235	63994294	+
GWHAAZE00000001	CDS	63995656	63995906	+
GWHAAZE00000001	CDS	63996405	63996571	+
GWHAAZE00000001	three_prime_UTR	63996572	63996881	+

Transcript Sequence
>GWHTAAZE001902 ATGAATAAAGCCGTCTTATCTTGCAGGTTAAAAAACACTGGTAGGACTGAATCTGAAGCTTACAAATACTTTGTATTGAGAACGCAAGAAATAGCTTTGTCCCATGGATATGAAATTGTTAACTGGGAGGAGACCTTTAACAACTTTGGCAGTAAATTGAGCCCAAAAACAGTGGTACATAACTGGCTAGGGAGTGGTGTTGCCAAGAAGGTGACGGAAGCTGGATTGAGGTGCATAGTAAGTAACCAGGATAAGTGGTACTTGGACCACTTGGATGCCACGTGGTGGGATTTCTATATGAATGAACCCCTCACAAATATCACAGAACCAGAACACCAGAAGTTAGTTATTGGGGGTGAGGTGTGTATGTGGGGTGAAAGCATTGATGGCTCTGATATTGAACAAACAATTTGGCCCCGCGCTGCCGCTGCCGCAGAGAGGCTGTGGACACCTTCTGAGAAACTAGCAAAGGAACCCGCGGAACTAACGAAAAGACTAACACACTTTAGGTGTCTATTGAACCAAAGAGGAGTTGCCGCTGCTCCTCTAGAAGGCCTTGGTCGAGATGCTCCGGTACAGCCGGGCTCCTGCTATGTTCAGTAGGAGAGGAAATGTATCACTCATTGAATATGTAAAGCAAGGGTAAGGATTTCCCATCATTCAGGGTGGCTACAGAAAAGGCAATTTGTGCAATATGGGGCTTTGACTTGGTTATATGACAGTTATTGTTCAATCAATTGTACCATGTCAATAGCCGAACCAAATAGGATACAACAGTGTAGATTTTTATTATTTTAGGCTCGGAAAGGGCTTTGTTAATCACTTGTAATTTATTTATTCTTTTTTTATTCATTATTTGCATGTCAAATTTTTAATCAATAAATTAATAAATTGTTCCATTCTTTTCTCTAAT

Network for GWHGAAZE001898

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00728.23	Glyco_hydro_20	13	151	7.00E-23
PF03283.14	PAE	26	378	1.20E-125

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12373	HEXA_B	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Various types of N-glycan biosynthesis	map00513
		Glycosaminoglycan degradation	map00531
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603
		Glycosphingolipid biosynthesis - ganglio series	map00604
		Other glycan degradation	map00511
		Wnt signaling pathway	map04310
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004563	molecular_function	beta-N-acetylhexosaminidase activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.424
	SRR3591706	second leaf	1.724
	SRR3591707	mature leaf	1.378
	SRR3591708	Shoot apex	1.594
	SRR3591709	Stem	1.696
	SRR3591710	White floral bud	14.456
	SRR3591711	White flower	1.105
	SRR3591712	Green floral bud	20.248
	SRR3591713	Yellow flower	0.428
SRP173429	SRR8316895	Juvenile bud stage	3.697
	SRR8316896	Juvenile bud stage	7.365
	SRR8316897	Juvenile bud stage	3.567
	SRR8316894	Third green stage	3.174
	SRR8316900	Third green stage	21.592
	SRR8316901	Third green stage	24.185
	SRR8316898	Complete white stage	1.398
	SRR8316899	Complete white stage	4.880
	SRR8316903	Complete white stage	1.614
	SRR8316902	Silver flowering stage	1.525
	SRR8316904	Silver flowering stage	2.195
	SRR8316905	Silver flowering stage	1.087
	SRR8316906	Gold flowering stage	3.008
	SRR8316907	Gold flowering stage	2.746
	SRR8316908	Gold flowering stage	1.898
SRP132670	SRR6706286	Control	11.237
	SRR6706287	Light intensity 50%	10.612
	SRR6706288	Light intensity 20%	9.327
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.784
	CNS0095593	Slightly white alabastrum(diploid) 2	18.327
	CNS0095594	Slightly white alabastrum(diploid) 3	22.002
	CNS0095595	Whole white alabastrum(diploid) 2	50.648
	CNS0095596	Whole white alabastrum(diploid) 3	63.990
	CNS0095597	Whole white alabastrum(diploid) 4	67.430
	CNS0095598	Silvery flower (diploied) 1	2.720
	CNS0095599	Silvery flower (diploied) 2	4.081
	CNS0095600	Silvery flower (diploied) 3	2.020
	CNS0095601	Golden flower (diploid) 1	2.705
	CNS0095602	Golden flower (diploid) 2	1.755
	CNS0095603	Golden flower (diploid) 3	1.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.569
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.830
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.045
	CNS0095610	Silvery flower (tetraploid) 1	1.584
	CNS0095611	Silvery flower (tetraploid) 2	3.268
	CNS0095612	Silvery flower (tetraploid) 3	7.665
	CNS0095613	Golden flower (tetraploid) 1	1.676
	CNS0095614	Golden flower (tetraploid) 2	0.912
	CNS0095615	Golden flower (tetraploid) 3	4.128
CRA001975	CRR073297	Stem 1	4.149
	CRR073298	Stem 2	4.127
	CRR073299	Stem 3	3.076
	CRR073300	Leaf 1	19.227
	CRR073301	Leaf 2	15.799
	CRR073302	Leaf 3	6.544
	CRR073303	Juvenile bud 1	16.383
	CRR073304	Juvenile bud 2	13.739
	CRR073305	Juvenile bud 3	1.565
	CRR073306	Third green 1	8.328
	CRR073307	Third green 2	8.084
	CRR073308	Third green 3	5.605
	CRR073309	Second white 1	1.705
	CRR073310	Second white 2	1.560
	CRR073311	Second white 3	2.655
	CRR073312	Silver flowering 1	8.946
	CRR073313	Silver flowering 2	8.203
	CRR073314	Silver flowering 3	3.365
	CRR073315	Gold flowering 1	9.437
	CRR073316	Gold flowering 2	2.278
	CRR073317	Gold flowering 3	2.666
	CRR073318	Tawny withering 1	4.598
	CRR073319	Tawny withering 2	4.531
	CRR073320	Tawny withering 3	5.892