Detail information of GWHGAAZE001891


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278608.20PREDICTED: ATP-dependent RNA helicase DHX36 [Vitis vinifera]
COGYP_003803623.12E-40hypothetical protein Spirs_1903
Swissprottr|Q38953|DHX8_ARATH5E-50Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|F6H574|F6H574_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47442.1}
TAIR10AT2G30800.10helicase in vascular tissue and tapetum

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6380920463835566-
GWHAAZE00000001mRNA6380920463835566-
GWHAAZE00000001exon6383531663835566-
GWHAAZE00000001exon6383512763835201-
GWHAAZE00000001exon6383211463832158-
GWHAAZE00000001exon6383050263830592-
GWHAAZE00000001exon6383032063830378-
GWHAAZE00000001exon6382790663828058-
GWHAAZE00000001exon6382433263824384-
GWHAAZE00000001exon6381773963817772-
GWHAAZE00000001exon6381619263817175-
GWHAAZE00000001exon6380920463809938-
GWHAAZE00000001five_prime_UTR6383537963835566-
GWHAAZE00000001CDS6383531663835378-
GWHAAZE00000001CDS6383512763835201-
GWHAAZE00000001CDS6383211463832158-
GWHAAZE00000001CDS6383050263830592-
GWHAAZE00000001CDS6383032063830378-
GWHAAZE00000001CDS6382790663828058-
GWHAAZE00000001CDS6382433263824384-
GWHAAZE00000001CDS6381773963817772-
GWHAAZE00000001CDS6381619263817175-
GWHAAZE00000001CDS6380920463809938-
Transcript Sequence

Network for GWHGAAZE001891

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD411821.60E-07
PF00271.32Helicase_C3534836.50E-14
PF04408.24HA25486655.10E-16
PF13639.7zf-RING_21812239.90E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K14442DHX36, RHAU RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.030
SRR3591706second leaf4.792
SRR3591707mature leaf5.836
SRR3591708Shoot apex6.154
SRR3591709Stem5.305
SRR3591710White floral bud6.161
SRR3591711White flower7.163
SRR3591712Green floral bud7.529
SRR3591713Yellow flower5.633
SRP173429 SRR8316895Juvenile bud stage 5.654
SRR8316896Juvenile bud stage 5.809
SRR8316897Juvenile bud stage 2.370
SRR8316894Third green stage 3.048
SRR8316900Third green stage 7.121
SRR8316901Third green stage 6.434
SRR8316898Complete white stage 1.790
SRR8316899Complete white stage 7.619
SRR8316903Complete white stage 4.092
SRR8316902Silver flowering stage2.127
SRR8316904Silver flowering stage3.369
SRR8316905Silver flowering stage1.278
SRR8316906Gold flowering stage 4.805
SRR8316907Gold flowering stage 3.577
SRR8316908Gold flowering stage 4.427
SRP132670SRR6706286Control4.066
SRR6706287Light intensity 50%4.926
SRR6706288Light intensity 20%4.023
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.954
CNS0095593Slightly white alabastrum(diploid) 22.367
CNS0095594Slightly white alabastrum(diploid) 33.077
CNS0095595Whole white alabastrum(diploid) 23.095
CNS0095596Whole white alabastrum(diploid) 32.138
CNS0095597Whole white alabastrum(diploid) 42.042
CNS0095598Silvery flower (diploied) 14.998
CNS0095599Silvery flower (diploied) 24.130
CNS0095600Silvery flower (diploied) 37.448
CNS0095601Golden flower (diploid) 13.734
CNS0095602Golden flower (diploid) 28.381
CNS0095603Golden flower (diploid) 37.967
CNS0095604Slightly white alabastrum(tetraploid) 13.682
CNS0095605Slightly white alabastrum(tetraploid) 22.659
CNS0095606Slightly white alabastrum(tetraploid) 39.177
CNS0095607Whole white alabastrum(tetraploid) 13.133
CNS0095608Whole white alabastrum(tetraploid) 21.556
CNS0095609Whole white alabastrum(tetraploid) 36.445
CNS0095610Silvery flower (tetraploid) 16.266
CNS0095611Silvery flower (tetraploid) 26.982
CNS0095612Silvery flower (tetraploid) 34.550
CNS0095613Golden flower (tetraploid) 12.782
CNS0095614Golden flower (tetraploid) 24.853
CNS0095615Golden flower (tetraploid) 33.753
CRA001975CRR073297Stem 17.550
CRR073298Stem 26.940
CRR073299Stem 34.496
CRR073300Leaf 16.304
CRR073301Leaf 25.361
CRR073302Leaf 33.393
CRR073303Juvenile bud 14.337
CRR073304Juvenile bud 22.436
CRR073305Juvenile bud 34.837
CRR073306Third green 10.880
CRR073307Third green 20.437
CRR073308Third green 30.864
CRR073309Second white 10.440
CRR073310Second white 21.015
CRR073311Second white 30.922
CRR073312Silver flowering 11.123
CRR073313Silver flowering 21.052
CRR073314Silver flowering 31.210
CRR073315Gold flowering 12.420
CRR073316Gold flowering 23.363
CRR073317Gold flowering 32.504
CRR073318Tawny withering 12.762
CRR073319Tawny withering 22.665
CRR073320Tawny withering 32.270