Detail information of GWHGAAZE001890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI22072.35.99998E-46unnamed protein product [Vitis vinifera]
trEMBLtr|F6H574|F6H574_VITVI2E-46Putative uncharacterized protein {ECO:0000313|EMBL:CCB47442.1}
TAIR10AT2G30800.17E-25helicase in vascular tissue and tapetum

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6380668463808955-
GWHAAZE00000001mRNA6380668463808955-
GWHAAZE00000001exon6380883063808955-
GWHAAZE00000001exon6380668463807327-
GWHAAZE00000001CDS6380883063808955-
GWHAAZE00000001CDS6380698063807327-
GWHAAZE00000001three_prime_UTR6380668463806979-
Transcript Sequence

Network for GWHGAAZE001890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07734.14FBA_11092538.90E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14442DHX36, RHAU RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.215
SRR3591706second leaf7.326
SRR3591707mature leaf8.945
SRR3591708Shoot apex11.861
SRR3591709Stem10.050
SRR3591710White floral bud7.844
SRR3591711White flower11.273
SRR3591712Green floral bud11.530
SRR3591713Yellow flower9.503
SRP173429 SRR8316895Juvenile bud stage 8.988
SRR8316896Juvenile bud stage 10.176
SRR8316897Juvenile bud stage 3.516
SRR8316894Third green stage 3.715
SRR8316900Third green stage 10.465
SRR8316901Third green stage 12.900
SRR8316898Complete white stage 1.953
SRR8316899Complete white stage 11.420
SRR8316903Complete white stage 4.867
SRR8316902Silver flowering stage2.683
SRR8316904Silver flowering stage5.790
SRR8316905Silver flowering stage1.403
SRR8316906Gold flowering stage 5.772
SRR8316907Gold flowering stage 4.464
SRR8316908Gold flowering stage 4.970
SRP132670SRR6706286Control4.789
SRR6706287Light intensity 50%4.316
SRR6706288Light intensity 20%5.351
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.323
CNS0095593Slightly white alabastrum(diploid) 215.217
CNS0095594Slightly white alabastrum(diploid) 311.298
CNS0095595Whole white alabastrum(diploid) 210.086
CNS0095596Whole white alabastrum(diploid) 310.550
CNS0095597Whole white alabastrum(diploid) 47.978
CNS0095598Silvery flower (diploied) 112.245
CNS0095599Silvery flower (diploied) 28.272
CNS0095600Silvery flower (diploied) 38.390
CNS0095601Golden flower (diploid) 110.228
CNS0095602Golden flower (diploid) 29.733
CNS0095603Golden flower (diploid) 39.337
CNS0095604Slightly white alabastrum(tetraploid) 110.817
CNS0095605Slightly white alabastrum(tetraploid) 210.118
CNS0095606Slightly white alabastrum(tetraploid) 312.786
CNS0095607Whole white alabastrum(tetraploid) 19.330
CNS0095608Whole white alabastrum(tetraploid) 27.961
CNS0095609Whole white alabastrum(tetraploid) 310.984
CNS0095610Silvery flower (tetraploid) 18.789
CNS0095611Silvery flower (tetraploid) 27.237
CNS0095612Silvery flower (tetraploid) 35.212
CNS0095613Golden flower (tetraploid) 15.782
CNS0095614Golden flower (tetraploid) 27.787
CNS0095615Golden flower (tetraploid) 34.684
CRA001975CRR073297Stem 16.955
CRR073298Stem 26.738
CRR073299Stem 35.297
CRR073300Leaf 17.454
CRR073301Leaf 26.543
CRR073302Leaf 34.306
CRR073303Juvenile bud 15.420
CRR073304Juvenile bud 22.473
CRR073305Juvenile bud 34.877
CRR073306Third green 11.526
CRR073307Third green 20.566
CRR073308Third green 30.881
CRR073309Second white 11.251
CRR073310Second white 21.423
CRR073311Second white 30.760
CRR073312Silver flowering 11.058
CRR073313Silver flowering 20.673
CRR073314Silver flowering 31.812
CRR073315Gold flowering 12.809
CRR073316Gold flowering 24.035
CRR073317Gold flowering 33.122
CRR073318Tawny withering 14.676
CRR073319Tawny withering 26.035
CRR073320Tawny withering 37.590