Gene detail

Detail information of GWHGAAZE001886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010277038.1	1.55108E-90	PREDICTED: 14-3-3-like protein D [Nelumbo nucifera]
Swissprot	tr\|P42654\|1433B_VICFA	3E-86	14-3-3-like protein B
trEMBL	tr\|A0A067FJH7\|A0A067FJH7_CITSI	1E-89	Uncharacterized protein {ECO:0000313\|EMBL:KDO63351.1}
TAIR10	AT1G34760.1	2E-68	general regulatory factor 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63744763	63747136	+
GWHAAZE00000001	mRNA	63744763	63747136	+
GWHAAZE00000001	exon	63744763	63745064	+
GWHAAZE00000001	exon	63745163	63745220	+
GWHAAZE00000001	exon	63745913	63746022	+
GWHAAZE00000001	exon	63746109	63746239	+
GWHAAZE00000001	exon	63746814	63747136	+
GWHAAZE00000001	CDS	63744763	63745064	+
GWHAAZE00000001	CDS	63745163	63745220	+
GWHAAZE00000001	CDS	63745913	63746022	+
GWHAAZE00000001	CDS	63746109	63746239	+
GWHAAZE00000001	CDS	63746814	63747136	+

Transcript Sequence
>GWHTAAZE001890 ATGGATGAGATGAAGAAAATAGCGAAACTTGATGTCGAATTGACTGTTGAGGAGCAGCATTTGCTTCGTGTTGGCTACACAAACTCGATTGGTCCTTGGAGGAATTCGTGGTGGATCCTATCTTCAATCATGCAAAAGGAAGAAGGGGAGGGTAATGAAGTTAATGCGAAATTAATCAGGGGGTACAGGGAGAAGGTTGAGTCCGAATTGGAGACGATTTGTAATGATATGCTGGCTTTAATCGATGAGCATTTGATTCCATCATCTTCATCCGAAGAATCAATTGTATTTTTATACAAACTGAAAGGGGATTACTACAGGTATTTAGCGGAATTTAAGGGCCATATTGAAAAGGAGGAGACAGCTATTACCAAAGCAGAGTCTTACCTCTCTCCTGCTCATCCCAACCGGTTAACTTTGTCCTTGAATGTCTCCGTCTTTTACTGTGACATTGTGAACAATCCTGAAAGGGGCTGCCATCTTGCTAAGCAAGCATATGATGAAGCCATCGCAGAATTAGATAGCCTCAGCGAGGAATCGTACAGAAATAGCATTTCAATCATGCAAATAATGCGGCAGAACCTCTTCTTATGGACTTCTGGAGCTATGGGTAAGCCAATTCCAATTGAGGTTTTGGCTTCTGTCCTCAAAGATTTTACACCTGAAGAGCAGCAAATAATGATTGCTGGAAATCTGTACCCGCTAGTACTGGAGCAGCTGGAGGATGAAGAAGCAAACAAAGTAACAGATATGCTACTAGAATTTGATCAGAATGAGGTGCTGCATTTGCTCGAGTCGCCTGAAGCTCTTAAAGCTGAAGTAGCTGAGGCCATGAAGGTCTTGAGGAATGTCACTGAGTCCCCTTCTGCTGCTGCTGTTGATGATCAATTGGATGCGTTGTCATTGAGTGATGATAATCAGTGA

Network for GWHGAAZE001886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	204	3.70E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07375	TUBB	Phagosome	map04145
K07375	TUBB	Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity
GO:0005200	molecular_function	structural constituent of cytoskeleton

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.201
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.924
	SRR8316897	Juvenile bud stage	0.441
	SRR8316894	Third green stage	0.280
	SRR8316900	Third green stage	1.863
	SRR8316901	Third green stage	2.749
	SRR8316898	Complete white stage	0.180
	SRR8316899	Complete white stage	0.157
	SRR8316903	Complete white stage	0.055
	SRR8316902	Silver flowering stage	0.179
	SRR8316904	Silver flowering stage	0.339
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.186
	SRR8316907	Gold flowering stage	0.524
	SRR8316908	Gold flowering stage	0.194
SRP132670	SRR6706286	Control	1.223
	SRR6706287	Light intensity 50%	1.074
	SRR6706288	Light intensity 20%	0.558
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.476
	CNS0095593	Slightly white alabastrum(diploid) 2	1.055
	CNS0095594	Slightly white alabastrum(diploid) 3	1.702
	CNS0095595	Whole white alabastrum(diploid) 2	1.252
	CNS0095596	Whole white alabastrum(diploid) 3	2.849
	CNS0095597	Whole white alabastrum(diploid) 4	1.577
	CNS0095598	Silvery flower (diploied) 1	0.248
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.032
	CNS0095601	Golden flower (diploid) 1	0.110
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.529
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.168
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.436
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.138
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.057
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.349
	CRR073298	Stem 2	0.396
	CRR073299	Stem 3	0.273
	CRR073300	Leaf 1	0.998
	CRR073301	Leaf 2	1.144
	CRR073302	Leaf 3	1.110
	CRR073303	Juvenile bud 1	0.341
	CRR073304	Juvenile bud 2	0.456
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	1.231
	CRR073307	Third green 2	0.513
	CRR073308	Third green 3	1.064
	CRR073309	Second white 1	0.073
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.309
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000