Gene detail

Detail information of GWHGAAZE001881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096437.1	0	PREDICTED: uncharacterized protein LOC105175632 [Sesamum indicum]
trEMBL	tr\|A0A068TLD7\|A0A068TLD7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO96782.1}
TAIR10	AT4G35540.1	2E-113	zinc ion binding;transcription regulators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63674579	63676219	+
GWHAAZE00000001	mRNA	63674579	63676219	+
GWHAAZE00000001	exon	63674579	63675983	+
GWHAAZE00000001	exon	63676029	63676219	+
GWHAAZE00000001	CDS	63674579	63675983	+
GWHAAZE00000001	CDS	63676029	63676219	+

Transcript Sequence
>GWHTAAZE001885 ATGGAAAGGTCTCGCCCCTGCTCGAGTTGCACAAAAAGAACCCTAGTCACAGATGATGAATCGGGAAATTTGATCTGTTCATCTTGTGGTATTGTTCAAGACTTCGACAATTTTCAAGCCAATATCGGAGGCATCAATGGCCCGACTGGCACTTACGTCCGCATTGGCAGTGCAGGAACCGGCAATGAATTTAGTTACAAAGAAATGAAAATTTACAAAGCACAGACTTTACTTGACGATCTTATGTTTAGGCTAGGGCTGTCGCCTTCGAGATCAAATGAGGTTAAACTTATGATCGAAACGATTACGGATGGGGAGTATGGTCAAGGGAATTGGTTTCCCGTCTTTATAGGGGCTTGTGCTTATGTTGTGATGAGGAAAGCTAATAAATCATTGCCGATTACGGAGGTGGCAAATGTGATTGGCTGCGATATTCATGAAGTTGGTAGAATGGTCACACGGGTCACAAACTTTCTTGATTTTAAGTTGCCAGAATTTGATATTGTGAATTCGTTCGAACGGGCAATTCGGACTTCCCCTAGTTTTACCTGCATTGAGAATGATAAAGTTGAGAGAATGTTGAAACAGGGGATCTTTTTATTACAGTGTTTGGTAAAGTGGTTCGTTACTACCGGTAGAACACCGCTTCCCGTGGTGGTGGCAGTTCTGTTTTTTGTTGCACAATTGAATCTAGTTGACGTTAAAATTGAAGATGTAGCGAGAGAATTACACATGTCGGTTTCTACATGCAAATTAAGATACAAGGAGCTTTTAGAACGACTTGTTGAAGTTGCCCAAGCTTTACCGTGGGGAAAAGATGTTACGGTTAAAAATGTTTTGAAGAACGCACCATTTGTGATTCAGTATATGGAGATGAGGTCAATGTCGAAAAATGGAAAAAAGGGGAAGAATTTCGGTAATGTCAGATTTGATATGGATGATTTGGTTGGTGATGTTTTGAGCAAAGGAGTCGATACTTGGACCGATGGGTATGAATCTTATGGCAGAAAGAACAATTCTCAATATTTTGAGGCAAATTCGTCATCGGGTTGGAGTGTTGATGATTTAGAACGGCTTAAGGTTTCACCTGAATGTTTGTCCACAATTTATTTGAAATTCTTGGATGAGTTTAACGGTGTTAAGTCCACAATAGAGAACGGAGAGGATAGCAGAAGAAAGAGAAGAAGAGAATTCGATGCTCCTGTTTGTAAAAATACGACAGAGTGGTGGAAAGGCAAATCGGAATTAAGCAAAAAAGCTTTTTTAAAGAAAATACTAGAGAAAGATGTTGGGTTGGATCCAATGCCTCCATCTTTTGTTAGCGGGTGTTTGGCTTATGATAGGAGGAGAGAGAAAATAAAGGCGGCAAAAATGCGCATTGGGCTTATTATGCATCCACCAGAGGAAAAAGAAAATCTTTCTGTTTCTAGTTGTGTAAAATTTGGGAAGAAACGCAAGAAATTGAAAGTTGATATTGATTGGGAAGATTTTGTAATCGAAACTCTTCTTCTTCATCAAGTGAAGGAAGACGAAATAGAGAAGGGACATTACAATGCGTTATTGGACTTGCACGTCTTTAATTATGGGAGTTCGTAA

Network for GWHGAAZE001881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03159.19	XRN_N	1	250	3.40E-94
PF17846.2	XRN_M	310	394	4.90E-37
PF17846.2	XRN_M	408	690	1.00E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20553	XRN4	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006139	biological_process	nucleobase-containing compound metabolic process
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0070897	biological_process	transcription preinitiation complex assembly
GO:0005634	cellular_component	nucleus
GO:0004534	molecular_function	5'-3' exoribonuclease activity
GO:0003676	molecular_function	nucleic acid binding
GO:0004527	molecular_function	exonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.124
	SRR3591706	second leaf	2.160
	SRR3591707	mature leaf	4.555
	SRR3591708	Shoot apex	2.201
	SRR3591709	Stem	6.494
	SRR3591710	White floral bud	6.319
	SRR3591711	White flower	9.899
	SRR3591712	Green floral bud	6.745
	SRR3591713	Yellow flower	8.286
SRP173429	SRR8316895	Juvenile bud stage	3.123
	SRR8316896	Juvenile bud stage	3.351
	SRR8316897	Juvenile bud stage	1.097
	SRR8316894	Third green stage	1.922
	SRR8316900	Third green stage	5.909
	SRR8316901	Third green stage	4.508
	SRR8316898	Complete white stage	2.672
	SRR8316899	Complete white stage	7.894
	SRR8316903	Complete white stage	5.698
	SRR8316902	Silver flowering stage	5.214
	SRR8316904	Silver flowering stage	6.362
	SRR8316905	Silver flowering stage	3.020
	SRR8316906	Gold flowering stage	10.888
	SRR8316907	Gold flowering stage	9.577
	SRR8316908	Gold flowering stage	9.311
SRP132670	SRR6706286	Control	4.167
	SRR6706287	Light intensity 50%	4.310
	SRR6706288	Light intensity 20%	4.430
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.111
	CNS0095593	Slightly white alabastrum(diploid) 2	4.571
	CNS0095594	Slightly white alabastrum(diploid) 3	4.225
	CNS0095595	Whole white alabastrum(diploid) 2	5.655
	CNS0095596	Whole white alabastrum(diploid) 3	5.800
	CNS0095597	Whole white alabastrum(diploid) 4	5.821
	CNS0095598	Silvery flower (diploied) 1	6.565
	CNS0095599	Silvery flower (diploied) 2	4.996
	CNS0095600	Silvery flower (diploied) 3	12.561
	CNS0095601	Golden flower (diploid) 1	7.568
	CNS0095602	Golden flower (diploid) 2	9.856
	CNS0095603	Golden flower (diploid) 3	9.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.464
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.461
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.861
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.134
	CNS0095610	Silvery flower (tetraploid) 1	12.526
	CNS0095611	Silvery flower (tetraploid) 2	12.128
	CNS0095612	Silvery flower (tetraploid) 3	7.992
	CNS0095613	Golden flower (tetraploid) 1	8.803
	CNS0095614	Golden flower (tetraploid) 2	11.618
	CNS0095615	Golden flower (tetraploid) 3	8.168
CRA001975	CRR073297	Stem 1	4.452
	CRR073298	Stem 2	4.384
	CRR073299	Stem 3	3.005
	CRR073300	Leaf 1	4.936
	CRR073301	Leaf 2	3.269
	CRR073302	Leaf 3	2.124
	CRR073303	Juvenile bud 1	4.442
	CRR073304	Juvenile bud 2	4.115
	CRR073305	Juvenile bud 3	2.332
	CRR073306	Third green 1	3.015
	CRR073307	Third green 2	2.746
	CRR073308	Third green 3	2.280
	CRR073309	Second white 1	2.346
	CRR073310	Second white 2	3.221
	CRR073311	Second white 3	3.833
	CRR073312	Silver flowering 1	2.193
	CRR073313	Silver flowering 2	0.970
	CRR073314	Silver flowering 3	2.397
	CRR073315	Gold flowering 1	0.800
	CRR073316	Gold flowering 2	3.213
	CRR073317	Gold flowering 3	1.393
	CRR073318	Tawny withering 1	3.698
	CRR073319	Tawny withering 2	2.829
	CRR073320	Tawny withering 3	3.293