Gene detail

Detail information of GWHGAAZE001880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007216008.1	8.3699E-176	hypothetical protein PRUPE_ppa014688mg [Prunus persica]
Swissprot	tr\|Q6DR10\|TBL43_ARATH	9E-152	Protein trichome birefringence-like 43
trEMBL	tr\|M5WTP1\|M5WTP1_PRUPE	3E-176	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17207.1}
TAIR10	AT2G30900.1	1E-121	TRICHOME BIREFRINGENCE-LIKE 43

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63660786	63667983	+
GWHAAZE00000001	mRNA	63660786	63667983	+
GWHAAZE00000001	exon	63660786	63661090	+
GWHAAZE00000001	exon	63664935	63665106	+
GWHAAZE00000001	exon	63666658	63666833	+
GWHAAZE00000001	exon	63667015	63667173	+
GWHAAZE00000001	exon	63667698	63667983	+
GWHAAZE00000001	CDS	63660786	63661090	+
GWHAAZE00000001	CDS	63664935	63665106	+
GWHAAZE00000001	CDS	63666658	63666833	+
GWHAAZE00000001	CDS	63667015	63667173	+
GWHAAZE00000001	CDS	63667698	63667983	+

Transcript Sequence
>GWHTAAZE001884 ATGGGCGATTTTTGTGTTTGTTCATCATCAATACTTGTACTGCTACTTATTAAACTTTGCCTCCTGAATTACTGCATAAATGGGGAGCAAGTTAGTAATGTTAATGCGAGGTCATCATCAACATCAACCAACGGCTGTGATTTATTCAGAGGGAGTTGGGTTCTTGATGATGAGTCTTCTTATCCGCTTTACGACACATCAAACTGCCCATTCATAGAGAAGGAGTTCGATTGCTTAAAAAACGGTCGACCCGACAAAGACTACCTGAAGTACAGGTGGCAGCCTTCTGGCTGCGTTTTACCAAGGTTCAACGGTGAGGATTTGTTGATGAAATTAAAGGGAAAGAGGCTGATGTTCGTAGGAGATTCATTGAGTCTTAACCAATGGCAGTCACTTACATGCATGCTTCATGTAGCTGCACCACAAGCTAACTACACCTTAGACAGGATTGGGGACCTTTCCAAATTCACATTTCCGACGTACAATGCTTCAATAATGTTCTCCAGAAATGCCTTTCTGGTTGACATCACAAGCGAGCCAAATGGAAGGGTTTTGAAATTAGACTCCATTTTGGGTAGCAAAGTGTGGCAAGGAATGGACGCTCTGATCTTCAACACGTGGCACTGGTGGCTTCATACCGGAAGAAAACAACCATGGGATTTGATAGAAGAAGGGGGTGCAACTTACAAAGACATGGACCGTTTGGTTGCATATGAGAAAGCATTGAATACATGGGCTACATGGGTTGAGTCCAATGTTGATCCTTTTAAAACCAAACTCTTCTTTCAGGGTGTTTCTCCTGATCATGCCAAGGGAATGGGGCAAAACGCGAAGGTCTGTGCAGGACAAACAAGGCCATTGGTAGGGCAAGATTATCCTCCACACCCTGCAGAATTGGTGCTAGAAAATGTGTTGAAGACAATGTCAAAACCAGTGTATTTATTAAACATAACAAGTCTATCACAATTAAGAGTAGACGGGCACCCGTCTGTCTATGGCCACGGTGGTCACCGCGACATGGATTGCAGCCACTGGTGTCTAGCCGGAGTTCCTGATATATGGAATGAACTTTTTTACGCATCTCTCATTCAAATATAA

Network for GWHGAAZE001880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14416.7	PMR5N	45	98	2.70E-24
PF13839.7	PC-Esterase	100	360	3.30E-86
PF03357.22	Snf7	12	209	2.20E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12198	CHMP5, VPS60	Endocytosis	map04144
K12198	CHMP5, VPS60	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.258
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.403
	SRR3591709	Stem	3.647
	SRR3591710	White floral bud	0.254
	SRR3591711	White flower	0.389
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.547
SRP173429	SRR8316895	Juvenile bud stage	0.185
	SRR8316896	Juvenile bud stage	0.356
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.494
	SRR8316900	Third green stage	0.378
	SRR8316901	Third green stage	1.317
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	0.188
	SRR8316903	Complete white stage	0.072
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.031
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.256
	SRR6706287	Light intensity 50%	0.128
	SRR6706288	Light intensity 20%	0.241
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.453
	CNS0095593	Slightly white alabastrum(diploid) 2	1.019
	CNS0095594	Slightly white alabastrum(diploid) 3	1.595
	CNS0095595	Whole white alabastrum(diploid) 2	1.046
	CNS0095596	Whole white alabastrum(diploid) 3	0.798
	CNS0095597	Whole white alabastrum(diploid) 4	0.597
	CNS0095598	Silvery flower (diploied) 1	0.561
	CNS0095599	Silvery flower (diploied) 2	0.330
	CNS0095600	Silvery flower (diploied) 3	0.415
	CNS0095601	Golden flower (diploid) 1	0.302
	CNS0095602	Golden flower (diploid) 2	1.617
	CNS0095603	Golden flower (diploid) 3	0.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.459
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.501
	CNS0095611	Silvery flower (tetraploid) 2	0.534
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.109
	CNS0095614	Golden flower (tetraploid) 2	0.069
	CNS0095615	Golden flower (tetraploid) 3	0.308
CRA001975	CRR073297	Stem 1	0.306
	CRR073298	Stem 2	0.622
	CRR073299	Stem 3	0.658
	CRR073300	Leaf 1	0.270
	CRR073301	Leaf 2	0.663
	CRR073302	Leaf 3	1.074
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.037
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	6.445
	CRR073319	Tawny withering 2	7.002
	CRR073320	Tawny withering 3	7.585