Gene detail

Detail information of GWHGAAZE001857

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006448035.1	1.5869E-168	hypothetical protein CICLE_v10014371mg [Citrus clementina]
COG	YP_284821.1	3E-13	protein kinase:GAF
Swissprot	tr\|Q8RWZ5\|SD25_ARATH	2E-50	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor)
trEMBL	tr\|V4UAV8\|V4UAV8_9ROSI	6E-169	Uncharacterized protein {ECO:0000313\|EMBL:ESR61275.1}
TAIR10	AT4G32300.1	5E-43	S-domain-2 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62898883	62901280	-
GWHAAZE00000001	mRNA	62898883	62901280	-
GWHAAZE00000001	exon	62898883	62899462	-
GWHAAZE00000001	exon	62899931	62900809	-
GWHAAZE00000001	exon	62901156	62901280	-
GWHAAZE00000001	CDS	62901156	62901280	-
GWHAAZE00000001	CDS	62899931	62900809	-
GWHAAZE00000001	CDS	62898883	62899462	-

Transcript Sequence
>GWHTAAZE001861 ATGGCTCAACAACTTTTCTGCTCCGCACTCAATAAATTTTATGGACGGATCAAGAATTACAGCAATCCTTCTAAGAGGAACATCTGGGCCAAGATTCGCATGCGGCTTCTTTTGCAATGGGAATTGCTAACTGCCAGCGTTTCAGCCACTAATTCGGCTCAACCAGAACAAGGTTGGTTTTCTCTTTTTCCTACTAATGAAGGTTTGTTGGCTTCGATTGAATCGAACCCTCCGCAAGTCTATGCTCAATATTTAGTCAGTGGTCCGAAAGCGAATGCAGGACCAAGTTATGTAAGGTTTCTAAATGGAAGTTTAGCTTTATTTATAAATTCTGTCGAACCTGGCGAACCAGACCGCGTGATTTCTATACCCCAAGCATCGTCAGCACAGTATATGAAGTTGGAGCCCGATGGACATTTGAAGGTATATGAATGGGAATCAGAGTGGAAGGAGGTGGCGGATCTACTTACGGGGTATCTTGGCGTGTGTAATTACCCAATGGTTTGTGGGAAAAATGGGATTTGCTCAAATGGGCAATGTAGTTGCCCCAGGTCATTTAGGCAAATAAGTGATAGGCAGCCTAATCTTGGTTGTTCTGAAATTGTTCCGCTTACTTGCAATTCTTCCCAATATCATACTTTTGTAGAGCTTGAGGATGTTACCTATTTTACCTTTAATTCAGATCTAAATCTTAGTCGCGTTGATATGGAGAGTTGTAAACAAGAATGCTTAAGGAATTGTTCGTGCAAAGCTGCTATATTTCGTTATGGTTCGGATCCCTTAGGCGGGGAATGCTATATGCCATCAGAGATATTTTCATTAATGAACAATGAAAAGGAAAACACTCATTACAACTCTTCCGCATTTGTCAAGGTTCAGATTCCACCAAGTGCAATCTCCCCTACATTGGCTCCCACTTCTTCACCAACAGCCAAGAAGAAAAACTGGCTTGGGACTATATTGGGATCCACATTGGGGGGTTTCTTTGTTCTTTTAATAATCGGGCAAAAGATCATCCACTTGGATATTAAACCTCAAAACATCCTTTTAGATGAGAATTATAATGCAAAGGTCGCCGATTTTGGGCTATCCAAGCTAGTGGACAGGAACCAGAGCCAAGTTATGACCACAATGAGGGGCACTCCTGGTTATCTGGCCCCAGAGTGGTTGAATTCGATTATTACAGAAAAGGTTGACGTATACAGCTTTGGAGTTGTGGTGTTGGAAATTTGTTGTGGAAGAAAGAATTTCGATCAATCCAAATCAGAAGAAAGCATGCATTTGCTAAGCCTCTTTCGGAAAAGAACGGAGGAAGGTAAACTTTTGGAAATGGTTGATTCATATAGCAAAGATATGCGCTCAAATGGAGCCGAAGTTGTGGAGATGATGAAGGTCGCGGCATGGTGCTTGCAAAATGACTATGTTATGAGGCCTTCGATGTCGGTGGTGGTTAAAGTTTTAGAGGGCGTTATGGAAGTCGAACAAAACCTTGATTGTGGATTCTCGAATCCATTACAGAAACGTGATGCACTTAACAATAGTAGCACCCCCTTGTTGCCTTCAGTTCTATCTGGACCAAGGTGA

Network for GWHGAAZE001857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08276.12	PAN_2	208	252	3.00E-06
PF00069.26	Pkinase	336	484	5.20E-28
PF03798.17	TRAM_LAG1_CLN8	66	249	2.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_SD-2b

KEGG pathway

KO	Enzyme	pathway	mapID
K23727	CERS5_6, LASS5_6	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0016021	cellular_component	integral component of membrane
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.335
	SRR3591706	second leaf	0.198
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.240
	SRR3591709	Stem	0.046
	SRR3591710	White floral bud	0.306
	SRR3591711	White flower	0.362
	SRR3591712	Green floral bud	0.756
	SRR3591713	Yellow flower	0.136
SRP173429	SRR8316895	Juvenile bud stage	8.318
	SRR8316896	Juvenile bud stage	4.311
	SRR8316897	Juvenile bud stage	5.140
	SRR8316894	Third green stage	1.738
	SRR8316900	Third green stage	1.496
	SRR8316901	Third green stage	1.994
	SRR8316898	Complete white stage	0.212
	SRR8316899	Complete white stage	2.748
	SRR8316903	Complete white stage	0.228
	SRR8316902	Silver flowering stage	0.213
	SRR8316904	Silver flowering stage	0.188
	SRR8316905	Silver flowering stage	0.111
	SRR8316906	Gold flowering stage	0.611
	SRR8316907	Gold flowering stage	0.238
	SRR8316908	Gold flowering stage	0.808
SRP132670	SRR6706286	Control	0.673
	SRR6706287	Light intensity 50%	1.144
	SRR6706288	Light intensity 20%	0.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.455
	CNS0095593	Slightly white alabastrum(diploid) 2	10.278
	CNS0095594	Slightly white alabastrum(diploid) 3	9.880
	CNS0095595	Whole white alabastrum(diploid) 2	4.392
	CNS0095596	Whole white alabastrum(diploid) 3	0.845
	CNS0095597	Whole white alabastrum(diploid) 4	3.759
	CNS0095598	Silvery flower (diploied) 1	11.528
	CNS0095599	Silvery flower (diploied) 2	12.270
	CNS0095600	Silvery flower (diploied) 3	4.514
	CNS0095601	Golden flower (diploid) 1	15.035
	CNS0095602	Golden flower (diploid) 2	8.739
	CNS0095603	Golden flower (diploid) 3	8.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.242
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.557
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.143
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.483
	CNS0095610	Silvery flower (tetraploid) 1	0.280
	CNS0095611	Silvery flower (tetraploid) 2	0.194
	CNS0095612	Silvery flower (tetraploid) 3	0.349
	CNS0095613	Golden flower (tetraploid) 1	0.164
	CNS0095614	Golden flower (tetraploid) 2	0.385
	CNS0095615	Golden flower (tetraploid) 3	0.308
CRA001975	CRR073297	Stem 1	4.205
	CRR073298	Stem 2	4.070
	CRR073299	Stem 3	4.763
	CRR073300	Leaf 1	3.998
	CRR073301	Leaf 2	7.039
	CRR073302	Leaf 3	2.496
	CRR073303	Juvenile bud 1	1.795
	CRR073304	Juvenile bud 2	1.859
	CRR073305	Juvenile bud 3	4.976
	CRR073306	Third green 1	0.359
	CRR073307	Third green 2	0.115
	CRR073308	Third green 3	0.153
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.026
	CRR073311	Second white 3	0.130
	CRR073312	Silver flowering 1	0.960
	CRR073313	Silver flowering 2	0.779
	CRR073314	Silver flowering 3	0.726
	CRR073315	Gold flowering 1	2.090
	CRR073316	Gold flowering 2	4.073
	CRR073317	Gold flowering 3	3.413
	CRR073318	Tawny withering 1	4.049
	CRR073319	Tawny withering 2	6.699
	CRR073320	Tawny withering 3	5.232