Gene detail

Detail information of GWHGAAZE001856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15997.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|O65238\|Y5537_ARATH	1E-29	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (Precursor)
trEMBL	tr\|A0A068V600\|A0A068V600_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15997.1}
TAIR10	AT1G78830.1	1E-30	Curculin-like (mannose-binding) lectin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62850051	62852521	-
GWHAAZE00000001	mRNA	62850051	62852521	-
GWHAAZE00000001	exon	62850051	62850383	-
GWHAAZE00000001	exon	62851034	62852521	-
GWHAAZE00000001	CDS	62851034	62852521	-
GWHAAZE00000001	CDS	62850051	62850383	-

Transcript Sequence
>GWHTAAZE001860 ATGGGTACTAAACTATGCTGGACTTTTTGCTATTTCATACCTATACTTTGTATTTCGAGCCTAATTCGCGCCCAGCCTTTTGACTATCCGACGGCCAATCTTTCTTCATCATGGCTCAACAACATTTCTTCTCCGCACACAATAAATTTCTTGGATGGATCAAGCATTACAACAATCCTTCTAAGAGGAACATCTGGGCCAAGATTCGCATGCGGCTTCTTTTGCAATGGGAATTGTACATCATACCACTTTGCAATCTACATTGTAACTCTAACAAATAGCAGTGGTGGAAATGTACTACATCCAATTTATTCCCCACAGGTTGTCTGGTCTGCTAATCGAAACAAGCCTGTAGGGAGCAATGCAACGTTGCAACTGTCGTTAGATGGAGATCTTGTTTTACGGGATGCTGATGGTACTTTGGTTTGGTCTACTAACACCGCAAGTAAAAATGTGGCCGGGTTGAACTTGACAGACAAGGGGAATCTTGTTCTGTTTGATAAAAACCATACGACGGTCTGGCAGTCTTTCGATTACCCAACGGATGCATTGGTTCCCGGGCAAAAGTTGGTGGTTGGCAAGAGGCTAACTGCCAGCGTTTCAGCCACTAATTCAGCTCAACCAGAACAAGGGTGGTTTTCTCTTTTTCCTACTAATGAAGGTTTGTTCGCTTCGATTGAATCGAACCCTCCGCAATTCTATGCTCAATATTTAGTCAGTGGTCCGAAAGAGAATCCGGGACCAAGTTATGTAAGGTTTCTAAATGGAAGTTTAGCTTTTTTTATAAATTCTGTGGAACCTGGCGACCCAGACGGCCTGATTTCTATACCCCAGGCATCGTCGGCACAGTATATGAAGTTGGAGTCCGACGGACATTTGAAGGTATATGAATGGGAATCAGAGTGGAAGGAGGTGGCGGATCTACTTTCGGGGTATCGTGGCTCTCTTGGCGTGTGTAATTACCCAATGGTTTGTGGGAAAAATGGGATTTGCTCAAATGGGCAATGTAGTTGCCCCAGGTCATTTAGGCAAATAAGTGATAGGCAGCCTAATCTTGGTTGTTCTGAAATTGTTCCGCTTACTTGCAATTCTGCCCAATATCATACTTTTGTAGAGCTCAAGGACGTTACCTATTTTACCTTTAATTCATATCTAAATCTTAGTCGCATTGATATGGAGAGTTGTAAACAAGAATGCTTAAGGAATTGTTCGTGCAAAGCTGCTATATTTCGTTATGGTTTGGATCCCTTAGACGGGGAATGTTATATGCCATCCGAGATACTTTCATTAATGAACGATGAAATCCCTTTCTTTTACAACTCTTCGGCGTTTGTCAAGGTTCAGATTCCACCAACAGCTAGGAAGAAAAACTGGCTTGGGACTATATTGGGATCCACATTTGGGGGTTTCTTTGTTCTTTTAATAACTGGGTTTGTGGTTTTCTTGAAGAGAAGAAAGGGCGAAGACGAACAGGATTTTCTAGATGAAAATTTCGACCAATCAAAATCAGAAGAAAGCATGCATTTGCTAAGCCTCTTTCGGAAAAGAATGGAGGAAGGCAAACTTTTGGAAATGGTTGATTCATATAGCGAAGATATGCGCTCAAATGGAGCCGAAGTTGTGGAGATGATGAAGGTCGCAGCATGGTGCTTGCAAAATGACTATGTTATGAGGCCTTCGATGTCGGTGGTGGTTAAAGTTTTAGAGGGCGTTATGGAAGTCGAACAAAACCTTGATTGTGGATTCTCGAATCCATTACAGAAACGTGATGCACTTAACAAGAGTAGCACCCCCTTGTTGCCTTCAGTTCTATCTGGACCA

Network for GWHGAAZE001856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	108	197	1.60E-22
PF08276.12	PAN_2	366	407	5.10E-06
PF07714.18	PK_Tyr_Ser-Thr	303	572	2.40E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.093
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.098
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.433
	SRR3591711	White flower	0.368
	SRR3591712	Green floral bud	0.303
	SRR3591713	Yellow flower	0.132
SRP173429	SRR8316895	Juvenile bud stage	0.184
	SRR8316896	Juvenile bud stage	0.056
	SRR8316897	Juvenile bud stage	0.324
	SRR8316894	Third green stage	0.123
	SRR8316900	Third green stage	0.036
	SRR8316901	Third green stage	0.054
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.029
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.010
	SRR8316904	Silver flowering stage	0.021
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.006
SRP132670	SRR6706286	Control	0.036
	SRR6706287	Light intensity 50%	0.025
	SRR6706288	Light intensity 20%	0.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.024
	CNS0095593	Slightly white alabastrum(diploid) 2	0.067
	CNS0095594	Slightly white alabastrum(diploid) 3	0.101
	CNS0095595	Whole white alabastrum(diploid) 2	0.022
	CNS0095596	Whole white alabastrum(diploid) 3	0.046
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.131
	CNS0095599	Silvery flower (diploied) 2	0.050
	CNS0095600	Silvery flower (diploied) 3	0.044
	CNS0095601	Golden flower (diploid) 1	0.035
	CNS0095602	Golden flower (diploid) 2	0.034
	CNS0095603	Golden flower (diploid) 3	0.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.021
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.188
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.078
	CNS0095610	Silvery flower (tetraploid) 1	0.044
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.049
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.013
	CRR073299	Stem 3	0.034
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.007
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.026
	CRR073304	Juvenile bud 2	0.052
	CRR073305	Juvenile bud 3	0.019
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.013
	CRR073316	Gold flowering 2	0.004
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.015
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000