Gene detail

Detail information of GWHGAAZE001855

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18750.1	3.83E-102	unnamed protein product [Coffea canephora]
Swissprot	tr\|P17801\|KPRO_MAIZE	0.000000004	Putative receptor protein kinase ZmPK1 (Precursor)
trEMBL	tr\|A0A068VD61\|A0A068VD61_COFCA	1E-102	Coffea canephora DH200=94 genomic scaffold, scaffold_278 {ECO:0000313\|EMBL:CDP18750.1}
TAIR10	AT5G35370.1	0.00000001	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62818820	62821227	-
GWHAAZE00000001	mRNA	62818820	62821227	-
GWHAAZE00000001	exon	62821075	62821227	-
GWHAAZE00000001	exon	62819868	62820745	-
GWHAAZE00000001	exon	62818820	62819099	-
GWHAAZE00000001	CDS	62821075	62821227	-
GWHAAZE00000001	CDS	62819868	62820745	-
GWHAAZE00000001	CDS	62818820	62819099	-

Transcript Sequence
>GWHTAAZE001859 ATGATTATCCGACGGCCAATCTTTCATCATCATGGCTCAACACCGTCTCTGCTCGGCACTCAACGAATTTCAGCGACGGATCAAGAATTACAACAATCCTTCAAAGAGGAACATTTGGGATCACAACATTCGCGTGTGGCTTCTTTTGCAATGTTGGTTGTTGGCAAGAGGCTAACTGCCATCGTTTCAGCCACTAATTTGGCTCAACCAGAACAAGGATGGTTTTCTCTTTTTCCAACTAATGAAGGTTTGTTCGCTTCGATTGAATCGAACCCTCCGCAAGTCTACGCTCAATATTTAGTCAGTGATACGAAAGCGCCAAGTTATGTAAGTCTAAATGGAAGTATAGTTTATTTTATAAATTCTGTTGAGCCTGGCGACCCCGTGATTTCTGTTCCCCAGGCATCCTCTACACAGTATATGAAGTTGGAGCCCGACGGACATTTGAAGGTTTATGAACGGCAATTAGAGTGGAAGGAGGTGGCGGATCTACTTATGGGGGATCTTGGCGACTGTAATTACCCAATGGTTTGTGGAAAATATGGGATTTGCTTAAATGGGCAATGTAGTTGCCCCAAGTCATTTAGGCAAATAAATGATAGGCAGCCTAATCTTGGTTGTTCCGAAATTGGTCATCTTACTTGCAGTTCTCCCCAATATCATACATTTGTAGAGCTCGAGGACGTTACCTATTTTACCTTTAATTCAGATCTTAATCTTAGTCGCGTTGATATGGAGAGTTGTAAACAAGAATGCTTAAGGAATTGTTCATGCAAAGCTGCTATATTTCGTTATGGTTCGGATCCCTTAGGCGGGGAATGCTATATGCCATCCGAGATATTTTCATTAATGAACAATGAAAAGGAAAACACTCATTACAACTCTTCTGCATTTGTCAAGGTTCAAATTCCATCAAGTGCAATCTCTGTTATGCCGGCTCCCACTTCTTCATCAATAGCCAAGAAGAAAAACTGGCTTCAGACTATATTGGGATCCGCATTTGGGGGTTTCTTTGTTCTTTTAATAATTGGAATGGAGGAAGGTAAAATTTTGGAAATGGTTGATTCGTATAGCGACGATATGCGCTCAAATGGAGCCGAAGTTGTGGAGGTGATGAAGGTCGCAGCATGGTGTTTGCAAAATGACTATGTTAAGAGGCCTTCGATGTCAGTGGTGGTTAAAGTTTTAGAAGGCGTTATGGAAGTCGAACAAAACCTTGATTGTGGCTTCTCGAATCCATTACAGAAACATGACACACTTAGAAAGAGTAGCACCCCATTGTTGCCTTCGATTCTATCTGGACCGAGGTGA

Network for GWHGAAZE001855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08276.12	PAN_2	219	261	2.70E-06
PF00069.26	Pkinase	55	311	1.20E-72
PF13499.7	EF-hand_7	357	418	7.80E-10
PF13499.7	EF-hand_7	429	492	2.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.233
	SRR3591711	White flower	0.192
	SRR3591712	Green floral bud	0.168
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.024
	SRR8316896	Juvenile bud stage	1.379
	SRR8316897	Juvenile bud stage	0.426
	SRR8316894	Third green stage	0.323
	SRR8316900	Third green stage	0.592
	SRR8316901	Third green stage	0.601
	SRR8316898	Complete white stage	0.190
	SRR8316899	Complete white stage	0.484
	SRR8316903	Complete white stage	0.176
	SRR8316902	Silver flowering stage	0.065
	SRR8316904	Silver flowering stage	0.079
	SRR8316905	Silver flowering stage	0.119
	SRR8316906	Gold flowering stage	0.120
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.006
SRP132670	SRR6706286	Control	0.294
	SRR6706287	Light intensity 50%	0.607
	SRR6706288	Light intensity 20%	0.831
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.257
	CNS0095593	Slightly white alabastrum(diploid) 2	1.251
	CNS0095594	Slightly white alabastrum(diploid) 3	0.604
	CNS0095595	Whole white alabastrum(diploid) 2	0.978
	CNS0095596	Whole white alabastrum(diploid) 3	0.332
	CNS0095597	Whole white alabastrum(diploid) 4	0.368
	CNS0095598	Silvery flower (diploied) 1	0.891
	CNS0095599	Silvery flower (diploied) 2	1.360
	CNS0095600	Silvery flower (diploied) 3	0.679
	CNS0095601	Golden flower (diploid) 1	1.418
	CNS0095602	Golden flower (diploid) 2	0.360
	CNS0095603	Golden flower (diploid) 3	0.559
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.359
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.850
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.395
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.366
	CNS0095610	Silvery flower (tetraploid) 1	0.057
	CNS0095611	Silvery flower (tetraploid) 2	0.052
	CNS0095612	Silvery flower (tetraploid) 3	0.028
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.012
	CNS0095615	Golden flower (tetraploid) 3	0.018
CRA001975	CRR073297	Stem 1	0.847
	CRR073298	Stem 2	1.385
	CRR073299	Stem 3	0.774
	CRR073300	Leaf 1	1.032
	CRR073301	Leaf 2	1.342
	CRR073302	Leaf 3	0.919
	CRR073303	Juvenile bud 1	0.731
	CRR073304	Juvenile bud 2	0.310
	CRR073305	Juvenile bud 3	0.470
	CRR073306	Third green 1	0.156
	CRR073307	Third green 2	0.171
	CRR073308	Third green 3	0.265
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.034
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.047
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.032
	CRR073316	Gold flowering 2	0.953
	CRR073317	Gold flowering 3	0.134
	CRR073318	Tawny withering 1	0.506
	CRR073319	Tawny withering 2	1.256
	CRR073320	Tawny withering 3	0.528