Gene detail

Detail information of GWHGAAZE001825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008235946.1	0	PREDICTED: cytochrome P450 87A3-like [Prunus mume]
COG	YP_007108009.1	1E-46	cytochrome P450
Swissprot	tr\|Q7XU38\|C87A3_ORYSJ	2E-133	Cytochrome P450 87A3
trEMBL	tr\|W9SX45\|W9SX45_9ROSA	0	Cytochrome P450 87A3 {ECO:0000313\|EMBL:EXC31560.1}
TAIR10	AT1G12740.1	9E-116	cytochrome P450, family 87, subfamily A, polypeptide 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62226793	62242532	+
GWHAAZE00000001	mRNA	62226793	62242532	+
GWHAAZE00000001	exon	62226793	62226995	+
GWHAAZE00000001	exon	62229123	62229453	+
GWHAAZE00000001	exon	62229617	62229769	+
GWHAAZE00000001	exon	62229863	62230114	+
GWHAAZE00000001	exon	62230977	62231069	+
GWHAAZE00000001	exon	62231167	62231245	+
GWHAAZE00000001	exon	62231442	62231548	+
GWHAAZE00000001	exon	62231785	62231912	+
GWHAAZE00000001	exon	62235198	62235419	+
GWHAAZE00000001	exon	62235905	62236013	+
GWHAAZE00000001	exon	62240979	62241131	+
GWHAAZE00000001	exon	62241394	62241471	+
GWHAAZE00000001	exon	62242253	62242348	+
GWHAAZE00000001	exon	62242464	62242532	+
GWHAAZE00000001	CDS	62226793	62226995	+
GWHAAZE00000001	CDS	62229123	62229453	+
GWHAAZE00000001	CDS	62229617	62229769	+
GWHAAZE00000001	CDS	62229863	62230114	+
GWHAAZE00000001	CDS	62230977	62231069	+
GWHAAZE00000001	CDS	62231167	62231245	+
GWHAAZE00000001	CDS	62231442	62231548	+
GWHAAZE00000001	CDS	62231785	62231912	+
GWHAAZE00000001	CDS	62235198	62235419	+
GWHAAZE00000001	CDS	62235905	62236013	+
GWHAAZE00000001	CDS	62240979	62241131	+
GWHAAZE00000001	CDS	62241394	62241471	+
GWHAAZE00000001	CDS	62242253	62242348	+
GWHAAZE00000001	CDS	62242464	62242532	+

Transcript Sequence
>GWHTAAZE001829 ATGTGGTCAGTTGGAGTATGCGTAGTTGTAGGATTGGCTACAATTTTCATAGGATATTGGGTAGAGAAGTGGAGGAATCCCAAATGCAACGGTATTCTTCCCCCTGGTTCCATGGGTTTTCCTCTGCTTGGGGAAACACTTTCCTTACTCATCCCTGGTCGCTCCTTAGACCTCCATCCTTTCGTCAAGAAGAGAATTCAGAGGTATGGGCCAATATTTAAAACCAGTTTGGGAGGTTTGCCAGTAGTTGTATCGACGGATGCAGAAGTTAACCACAACATATTTCTTCAAGAAGGGAGGTCAGTCGAGTTATGGTACATGAGCTCCTTTGCTAAGCTGTTCAATCAAGATGGAGATTCAAGGACAAATGCGCTTGGGGCTGTTCATAGATACGTAAGAGGTATAGTTTTGAATCACTTTGGAGCTGAGTCTCTCAAGAAAAATTTGCTTGCTCAAATTGAAGTTGTGGTTGACAAAACACTCCAAAGTTGGTCTACCCAAGAATCTGTTGATGTCAAACATGCTGTTTCTAGTATGGCTTTTGAGTTTACAGCGAAACGCATGTTTAGTTATGATCCCAGTAAGTCATCCCAGAAGATTGATAACGAACAGTTGGCTAATCTCTTAAAAGGTCTCATGTCTTTTCCTGTAGATGTTCCGGGTACTGAATTCCACAAATGCATGAAGGTTCAAAAGGCGGTAACAAATATAATAAGGGAAAAGATAAAAGAGAAACGAAGTACTTTACCTGGGAATCGTCCAGGAGACCTTCTGGATCAAGCAGTGAAAGACATGGAAACTGAGAAGTTTGTGACAGATGATTTCATAGTTCCATTTATATTCGCGATTGTGTTCGCTAGCTTTGAGTCACTTTCATCGGCACTGACATTAACTTTTAAGTTACTCTCTGAACACCCTGCCGTTGTCGAGGAGCTAATTGCTGAGCACGACGGAATTTTGAAGAACAGAGGAGAATCTACAGAATCTCCTCTCACATGGGAAGAGTACAAATCAATGACTTTCACGCACCACGTCATTAGCGAAACTCTTAGGTTGTCAAATGTGGCTCCCGGGTTTCTTCGAAGAGCACTGAAAGATGTTGAAGTGCATGGTTATACAATTCCAGCAGGTTGGACCATAATGTTGGCCAGTTCTGCTCAGCAACTAAATCCAAAAACGTTTAAAGACCCCCTCGAGTTCAATCCATGGCGCTGGAAGGATCTTGATTCAATGGTTGTATCAAAAAATTTTATTCCTTTTGGAGGGGGAATGAGACAATGTGCTGGGGCGGAATTTAGTAAGGCATTCATGGGAGCCTTTCTCCATGTTTTAGTCACAAAATACAGGTACTTCAAAAATAGTATGTTGTCAGCTGGAGTGTGTGTAGTTGTAGGATTGGTTACAATATTGATAGGATATTACTGGGTAGAGAAGTGGAGGAATCCCAAATCCAATGGAATTCTTCCCCCTGGATTCATGGGTTTTCCTCTGATTGGGGAAACTTTTCAATTGCTCATCCCCGGTCGCTCCCTAGACCTCCACCCTTTCCTCAAGAAGAGATTTCAGAGGAGAATCAAGAACAAAAAGCTTGGAGTTGTTTATAGATATGGAAGAAGTATAGTTTTGAGTCACTTTGGTGCTGAGCCTCTCAAGGAAAGTTTGCTTGCTGAAATTGAAATGGTTTTTGACTTCACAGCTAAGCGCGTGTTTAGTTATGATCCCAAGAAGTCATCCGAGAAGGTTGATAGTAAACAGTTGGCTAATCTCTTACAAGGTCTTATGTCGTTCCCAGTAGACATACCTGGTACTAAATTCCACAAATGCATGAAGCTTCGAGTCGATTTCATCGCACTAACATTGGCCTTCAAGTTACTTTCTGAACACCCTGTTGTCGTCGAGGAGCTAATTGCTGAGCATAACCAAATTCTGAAGAACAGAGGAGAAAATTTGAAGTCCTCCCCCATCTCATGGGAAGAGTACAAATCAATGACTTTTACGCACCACGTAGTCAGCGAAATTCTTAGGTTGTCAAATACTCAAATGTGGCTCTTGGATTTCTCCGAAGAGCGCTGA

Network for GWHGAAZE001825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	34	449	5.10E-60
PF03140.16	DUF247	1	115	1.90E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.838
	SRR3591708	Shoot apex	0.068
	SRR3591709	Stem	0.180
	SRR3591710	White floral bud	1.430
	SRR3591711	White flower	6.079
	SRR3591712	Green floral bud	1.487
	SRR3591713	Yellow flower	9.484
SRP173429	SRR8316895	Juvenile bud stage	0.287
	SRR8316896	Juvenile bud stage	1.637
	SRR8316897	Juvenile bud stage	0.636
	SRR8316894	Third green stage	0.678
	SRR8316900	Third green stage	0.896
	SRR8316901	Third green stage	1.823
	SRR8316898	Complete white stage	4.953
	SRR8316899	Complete white stage	2.795
	SRR8316903	Complete white stage	3.461
	SRR8316902	Silver flowering stage	2.652
	SRR8316904	Silver flowering stage	5.143
	SRR8316905	Silver flowering stage	2.771
	SRR8316906	Gold flowering stage	56.760
	SRR8316907	Gold flowering stage	9.834
	SRR8316908	Gold flowering stage	80.167
SRP132670	SRR6706286	Control	2.090
	SRR6706287	Light intensity 50%	0.888
	SRR6706288	Light intensity 20%	0.560
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.132
	CNS0095593	Slightly white alabastrum(diploid) 2	0.103
	CNS0095594	Slightly white alabastrum(diploid) 3	0.244
	CNS0095595	Whole white alabastrum(diploid) 2	0.016
	CNS0095596	Whole white alabastrum(diploid) 3	0.103
	CNS0095597	Whole white alabastrum(diploid) 4	0.029
	CNS0095598	Silvery flower (diploied) 1	0.195
	CNS0095599	Silvery flower (diploied) 2	0.061
	CNS0095600	Silvery flower (diploied) 3	3.100
	CNS0095601	Golden flower (diploid) 1	2.071
	CNS0095602	Golden flower (diploid) 2	3.264
	CNS0095603	Golden flower (diploid) 3	2.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.117
	CNS0095610	Silvery flower (tetraploid) 1	2.215
	CNS0095611	Silvery flower (tetraploid) 2	0.037
	CNS0095612	Silvery flower (tetraploid) 3	1.987
	CNS0095613	Golden flower (tetraploid) 1	4.339
	CNS0095614	Golden flower (tetraploid) 2	6.724
	CNS0095615	Golden flower (tetraploid) 3	0.050
CRA001975	CRR073297	Stem 1	0.005
	CRR073298	Stem 2	0.106
	CRR073299	Stem 3	0.077
	CRR073300	Leaf 1	0.160
	CRR073301	Leaf 2	0.032
	CRR073302	Leaf 3	0.004
	CRR073303	Juvenile bud 1	0.008
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.240
	CRR073306	Third green 1	0.130
	CRR073307	Third green 2	0.016
	CRR073308	Third green 3	0.452
	CRR073309	Second white 1	0.668
	CRR073310	Second white 2	1.026
	CRR073311	Second white 3	1.019
	CRR073312	Silver flowering 1	4.135
	CRR073313	Silver flowering 2	4.406
	CRR073314	Silver flowering 3	1.563
	CRR073315	Gold flowering 1	0.015
	CRR073316	Gold flowering 2	0.661
	CRR073317	Gold flowering 3	1.517
	CRR073318	Tawny withering 1	10.199
	CRR073319	Tawny withering 2	26.493
	CRR073320	Tawny withering 3	1.038