Gene detail

Detail information of GWHGAAZE001812

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656933.1	0	PREDICTED: mitogen-activated protein kinase 20 isoform X1 [Vitis vinifera]
COG	YP_002560205.1	3E-24	hypothetical protein MCCL_0802
Swissprot	tr\|Q9SJG9\|MPK20_ARATH	0	Mitogen-activated protein kinase 20
trEMBL	tr\|F6HNZ0\|F6HNZ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56396.1}
TAIR10	AT2G42880.1	0	MAP kinase 20

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	61978555	61985350	+
GWHAAZE00000001	mRNA	61978555	61985350	+
GWHAAZE00000001	exon	61978555	61978951	+
GWHAAZE00000001	exon	61979175	61979302	+
GWHAAZE00000001	exon	61979410	61979469	+
GWHAAZE00000001	exon	61981082	61981231	+
GWHAAZE00000001	exon	61981918	61982073	+
GWHAAZE00000001	exon	61982950	61983161	+
GWHAAZE00000001	exon	61983488	61983589	+
GWHAAZE00000001	exon	61984397	61984554	+
GWHAAZE00000001	exon	61984650	61985350	+
GWHAAZE00000001	CDS	61978555	61978951	+
GWHAAZE00000001	CDS	61979175	61979302	+
GWHAAZE00000001	CDS	61979410	61979469	+
GWHAAZE00000001	CDS	61981082	61981231	+
GWHAAZE00000001	CDS	61981918	61982073	+
GWHAAZE00000001	CDS	61982950	61983161	+
GWHAAZE00000001	CDS	61983488	61983589	+
GWHAAZE00000001	CDS	61984397	61984554	+
GWHAAZE00000001	CDS	61984650	61985098	+
GWHAAZE00000001	three_prime_UTR	61985099	61985350	+

Transcript Sequence
>GWHTAAZE001816 ATGGAGTTCTTCTCAGAATATGGCGATGCCAACAGATATAAAATTCAGGAGGTTATAGGAAAAGGCAGCTATGGTGTTGTTTGCTCAGCCATTGATACCCATACTGGTGAGAAAGTGGCAATAAAGAAAATTCATGATATTTTTGAACATATCTCTGACGCTGCTCGGATACTCCGAGAAATAAAGCTTCTCAGATTATTACGACACCCCGACATTGTTGAAATTAAACACATTATGCTTCCACCTTCGAGAAGAGATTTTAAAGATATTTATGTCGTTTTTGAGCTCATGGAGTCGGATCTTCATCAAGTTATTAAAGCTAATGATGACTTGACAAGGGAACACTATCAGTTCTTTCTCTACCAATTGCTTCGTGCTCTGAAGTATATTCATACAGCCAATGTCTTTCATCGAGATTTAAAGCCAAAAAATATATTGGCAAATGCCAATTGTAAACTCAAAATTTGTGATTTCGGGTTGGCAAGAGTTGCATTCAATGATACCCCTACAACAATATTTTGGACGGATTATGTTGCCACAAGATGGTATAGAGCTCCAGAGCTATGTGGGTCATTCTTCTCTAAGTACACACCTGCAATTGATATATGGAGTATAGGTTGCATATTTGCTGAGGTTTTAACTGGGAAGCCCCTGTTTCCTGGAAAAAATGTTGTTCACCAGCTTGATTTGATGACTGATCTTCTAGGGACGCCTTCAATGGACACCATTTCTAGGGTTCGAAATGAGAAGGCAAGGAGATATCTTACTACGATGAGGAAGAAGCAGATTGTGCCTTTTGGACAGAAATTTCCAAACGCAGATCCTTTGGCACTACGACTATTAGAAAGGCTGCTGGCTTTCGATCCAAAGGACCGGCCTACTGCTGAAGAGGCATTGGCTGACCCTTACTTCAAGGGACTGGCCAAAGTTGAGAGAGAACCATCTTGCCAGCCAATTACAAAGATGGAATTTGAATTTGAGAGGCGAAGGGTAACAAAGGAAGACATACGCGAGCTAATTTTCCGGGAGATACTAGAATACCATCCTCAGCTTCTCAAGGATTACATGAATGGAATCGAAAGAACTAATTTTCTTTATCCAAGTGCTGTTGACCAATTTAGGAAACAGTTTGCTCATCTTGAAGAAAATGCTGGTAAAACTGGGCCAGTGGTTCCGCTAGAGAGAAAGCATGTGTCTCTCCCTAGATCGACCATTGTACATTCAAATACAATCCCTCCTAAAGAACAGCCAAATCCAACCGCTACTTTCAGAGATCGGCAATCCATGGAAGATTCGTGCAATACCAATGGAATTCCCGTTAGTTTATCACGAACCTCACAGGCACAACAGAGGATCCCAATGGCCAAACCTGGGAAAGTTGTGGGCCCAGTTTATGATAACGGAAACACTGCAAAGGAAACCTATGACCCGCGGTCGCTAGCAAGAAACACGGTCCTCCCACCTCAGGTTGCCCCACCGGCATACTGTTACCGGAGGGGTGGAAACGGAAAGCTGGAAAGATCGGCACCGGGCGAGACGACGGAGAGGGACTTATCTTCGCAAACCAAACAAGTACTAGGCATGGCGGCGGCCAAATTAGCCCCCGACATAGCCATCAACATTGACACCAACCCGTTTTACATGACCAGAGCCGGAGTGACTAAGATGGACCGTGCTGACCCCGTTGACTCCAACTTGTTACAGGGAAAAGCTCATCAGTTTGGTGGCATTGGTGCTGCAGCAGCAGCTGCTTCCACAGCCGCTCACCGGAAAGTTGGGACGGTGCAGTTCGGTATGTCGAGAATGTACTAGTTGATTGCAAATTCGGTATGGAGCTATACACATCTCCAGAGAGGGCAAAAAACCACTTCCTGGGAGAGAGAGAGAGAGGAGTCCTCCCTTGAAAGCCGTGTGGCTGGTGGTTTTGTACAGGAAGTATGAGAATTGGATGGTATGGTTTAAAGTTGGTATTAAAAGAGTGAGTAGTATTAGTAATCTTTGGTGTTTGAGAAACTGAAAGTATAGATTTATCTTCACAGAAGCAGCTTTATGTGTCTGAGCTAT

Network for GWHGAAZE001812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	13	304	1.00E-67
PF00664.24	ABC_membrane	2	170	1.70E-15
PF00005.28	ABC_tran	209	344	2.00E-21
PF00664.24	ABC_membrane	501	659	1.20E-11
PF00005.28	ABC_tran	747	895	1.20E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0006468	biological_process	protein phosphorylation
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0004707	molecular_function	MAP kinase activity
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	77.422
	SRR3591706	second leaf	43.002
	SRR3591707	mature leaf	39.473
	SRR3591708	Shoot apex	51.079
	SRR3591709	Stem	124.847
	SRR3591710	White floral bud	81.527
	SRR3591711	White flower	66.180
	SRR3591712	Green floral bud	106.901
	SRR3591713	Yellow flower	41.390
SRP173429	SRR8316895	Juvenile bud stage	21.695
	SRR8316896	Juvenile bud stage	32.691
	SRR8316897	Juvenile bud stage	11.415
	SRR8316894	Third green stage	19.058
	SRR8316900	Third green stage	58.697
	SRR8316901	Third green stage	54.925
	SRR8316898	Complete white stage	32.089
	SRR8316899	Complete white stage	114.405
	SRR8316903	Complete white stage	49.308
	SRR8316902	Silver flowering stage	20.600
	SRR8316904	Silver flowering stage	30.529
	SRR8316905	Silver flowering stage	13.293
	SRR8316906	Gold flowering stage	35.858
	SRR8316907	Gold flowering stage	33.290
	SRR8316908	Gold flowering stage	38.146
SRP132670	SRR6706286	Control	55.662
	SRR6706287	Light intensity 50%	54.847
	SRR6706288	Light intensity 20%	57.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.237
	CNS0095593	Slightly white alabastrum(diploid) 2	34.978
	CNS0095594	Slightly white alabastrum(diploid) 3	28.644
	CNS0095595	Whole white alabastrum(diploid) 2	34.055
	CNS0095596	Whole white alabastrum(diploid) 3	29.422
	CNS0095597	Whole white alabastrum(diploid) 4	37.916
	CNS0095598	Silvery flower (diploied) 1	42.838
	CNS0095599	Silvery flower (diploied) 2	36.583
	CNS0095600	Silvery flower (diploied) 3	61.340
	CNS0095601	Golden flower (diploid) 1	30.782
	CNS0095602	Golden flower (diploid) 2	45.234
	CNS0095603	Golden flower (diploid) 3	46.695
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.840
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.315
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.885
	CNS0095610	Silvery flower (tetraploid) 1	59.515
	CNS0095611	Silvery flower (tetraploid) 2	50.099
	CNS0095612	Silvery flower (tetraploid) 3	62.632
	CNS0095613	Golden flower (tetraploid) 1	29.094
	CNS0095614	Golden flower (tetraploid) 2	50.190
	CNS0095615	Golden flower (tetraploid) 3	32.786
CRA001975	CRR073297	Stem 1	50.239
	CRR073298	Stem 2	52.429
	CRR073299	Stem 3	44.368
	CRR073300	Leaf 1	67.432
	CRR073301	Leaf 2	66.830
	CRR073302	Leaf 3	43.586
	CRR073303	Juvenile bud 1	65.113
	CRR073304	Juvenile bud 2	68.267
	CRR073305	Juvenile bud 3	87.719
	CRR073306	Third green 1	49.515
	CRR073307	Third green 2	46.398
	CRR073308	Third green 3	58.390
	CRR073309	Second white 1	37.811
	CRR073310	Second white 2	30.131
	CRR073311	Second white 3	24.702
	CRR073312	Silver flowering 1	20.206
	CRR073313	Silver flowering 2	22.416
	CRR073314	Silver flowering 3	19.056
	CRR073315	Gold flowering 1	22.720
	CRR073316	Gold flowering 2	27.025
	CRR073317	Gold flowering 3	24.831
	CRR073318	Tawny withering 1	59.871
	CRR073319	Tawny withering 2	50.033
	CRR073320	Tawny withering 3	58.186