Gene detail

Detail information of GWHGAAZE001798

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004493720.1	0	PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|O04408\|KSA_PEA	0	Ent-copalyl diphosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0KDX5\|A0A0A0KDX5_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN47910.1}
TAIR10	AT4G02780.1	2E-136	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	61583859	61596570	+
GWHAAZE00000001	mRNA	61583859	61596570	+
GWHAAZE00000001	exon	61583859	61584162	+
GWHAAZE00000001	exon	61588858	61589044	+
GWHAAZE00000001	exon	61589734	61589948	+
GWHAAZE00000001	exon	61590461	61590581	+
GWHAAZE00000001	exon	61590910	61591025	+
GWHAAZE00000001	exon	61591457	61591683	+
GWHAAZE00000001	exon	61591781	61591896	+
GWHAAZE00000001	exon	61592234	61592332	+
GWHAAZE00000001	exon	61593595	61593706	+
GWHAAZE00000001	exon	61595687	61595881	+
GWHAAZE00000001	exon	61596340	61596570	+
GWHAAZE00000001	CDS	61583859	61584162	+
GWHAAZE00000001	CDS	61588858	61589044	+
GWHAAZE00000001	CDS	61589734	61589948	+
GWHAAZE00000001	CDS	61590461	61590581	+
GWHAAZE00000001	CDS	61590910	61591025	+
GWHAAZE00000001	CDS	61591457	61591683	+
GWHAAZE00000001	CDS	61591781	61591896	+
GWHAAZE00000001	CDS	61592234	61592332	+
GWHAAZE00000001	CDS	61593595	61593706	+
GWHAAZE00000001	CDS	61595687	61595881	+
GWHAAZE00000001	CDS	61596340	61596570	+

Transcript Sequence
>GWHTAAZE001802 GTTTGCACATTAGAGGAGATTGAGAAATATGTGAATCAAATCAAGATGATTCTTGAGTCAATGGAGGGTGGAGAGCTAACCACATCAGGCTATGACACAGCAATGGTTGCACTTGTTGAGGATATTAATGGTAGTGGTAGCCCTCAATTTCCCTCTTGCTTAGAGTGGATTGCTAATAATCAAATGGAAGATGGTTCATGGGGTGCTCCATATTTATTTGCTTATTTCGATCGCCTCATCAACACTTTAGCATGCATAGTTGCACTCAAGAAGTGGAATCTCCAGCCCCACAAAATTCAAAAAGGAATTACATTTTTTAAAGAGAACTTCAATAACCTTGCAAATGAGAACGAGGAACACATGCTCATTGGCTTTGAAATTGCTTTCCCTGGTCTAATCCAAAAAGCCCGAAAATACGGAATTGAAGTTCCAGATGATTCCCATCCAATCTTGAAAGACATCAATGCCAAGAGAGATTACAAGCTATCCAAGATCCCGAAGGAAGTACTTCATACGGAGCATACAACACTTCTGTTTAGTGTGGAAGGATTAGAAGATTTAGACATGGATAAGTTATTGAAATTACAATGCCCAGATGGCTCAATGTTTTATTCTCCTGCCTCCACTGCTCATGTACTCACCCACACTAAAGATCCCAACTGCTTGAAATATCTAAATCATGTTATTGACAGATCCAACGGTGGAGTGCCATGTACGTACCCAGTTGACATGTTTGCTCGTAATTGGGCAATAGATCAGCTACAGCGCCTTGGAATTTCCCGCTATTTTGTGCCTCAAATCGACCATTTGGTTAGCTATGTTTCCAGATATTGGGATCCAAAACGTGGAGCTTATAGTGGAAGTAACAGTCCAATTCAAAATATTGATGATACAGCCTTATGTTTTATGAATTTGAGGTTCCATGGCCACGATATCTCTCCAGATGCATTTTGGCATTTCAAATATGGAGATGCATTTTGTTGCTTCCCAAGGCAATCATCGGAATCCGTTACCGCTATTTTCGATTTATTTAGGGCTACTCAACTTCAATTCCCCGGAGAGAAAGTTATGGACGAAGCCAAGAACTTTTCCTACAATTTTTTGAGGAAAAGGGAGGCAAATAATACTCTGATAGATAAATGGGTGATACTTAAGGATTTGCCTGGTGAGGTAGGATATGCATTAGATATGCCATTTTTTGCTAACTTACCTCATCTGGAGACAAGGATCTACATAGAACAATATGGTGGGGAGGAGGATGTATGGATCGGTAAAACCTTGTATCAGTTGAAAGAAGTCAACAATAATACCTATCTAGCGCTTGCAAAATTAGACTATAATATTTGCCAAGAAAAACATCAAAATGAATGGCAAGATATGCTGAGTTACAATGTTGGAGGGAGACTCACTGGCATTCTGTGTAGAACCTTATATCAACTCTCGATGGACGCAATGGAAGCCCACGACAGAGATATCTTCCAACCCTTACTTCATGCTTGGGAGATGTGGTTGATGATTTGGCAAGAAGAAGATGTTATGCCACAATCAGAAGCAGTGCTTTTAGCAACCACAACAAACATCTTTGCAAATCGTTTAGTATCAGAGGAGCTTTTATCTCACCCACAATACAAGCGTCTTACGGAACTAACTGATCAAATTTATCGCTACCTTTATCAATTTCAGGACAAAAAGGTACCAGATGATTGCAAGGGGAATACAAAAAGTAGCAACATCATGACCGTTGAAATAGAATCAGACATGCAAGAACTCCTTCATTTGGTTCTTAAAAAATCAGGGGATGGGATTGATTCTAAAATCAAGCAAACATTTCTCGCAGTAACAAAGAGTTACTACTACACTGCTTATTGTTCTCCTACCACTATCAACATCCACATGGATAAAGTACTCTTTCAACGTGTATAA

Network for GWHGAAZE001798

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	190	395	1.00E-36
PF07714.18	PK_Tyr_Ser-Thr	45	110	2.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.170
	SRR3591706	second leaf	0.052
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.055
	SRR3591709	Stem	0.293
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.038
	SRR3591712	Green floral bud	0.065
	SRR3591713	Yellow flower	1.628
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.035
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.009
	SRR8316898	Complete white stage	0.065
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.019
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.131
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.800
SRP132670	SRR6706286	Control	0.003
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.390
	CNS0095600	Silvery flower (diploied) 3	0.070
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.048
	CNS0095603	Golden flower (diploid) 3	0.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.055
	CNS0095612	Silvery flower (tetraploid) 3	0.017
	CNS0095613	Golden flower (tetraploid) 1	0.014
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.033
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.043
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.032
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.121
	CRR073313	Silver flowering 2	0.219
	CRR073314	Silver flowering 3	0.129
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.735
	CRR073319	Tawny withering 2	2.010
	CRR073320	Tawny withering 3	0.094