Gene detail

Detail information of GWHGAAZE001772

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010275091.1	9.1239E-105	PREDICTED: cytochrome b561 domain-containing protein At2g30890, partial [Nelumbo nucifera]
Swissprot	tr\|Q0WPS2\|B561M_ARATH	2E-70	Cytochrome b561 domain-containing protein At4g18260 (Precursor)
trEMBL	tr\|E0CU29\|E0CU29_VITVI	3E-99	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22095.3}
TAIR10	AT4G18260.1	2E-58	Cytochrome b561/ferric reductase transmembrane protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60097446	60101713	+
GWHAAZE00000001	mRNA	60097446	60101713	+
GWHAAZE00000001	exon	60097446	60097613	+
GWHAAZE00000001	exon	60100522	60100670	+
GWHAAZE00000001	exon	60101392	60101713	+
GWHAAZE00000001	CDS	60097446	60097613	+
GWHAAZE00000001	CDS	60100522	60100670	+
GWHAAZE00000001	CDS	60101392	60101713	+

Transcript Sequence
>GWHTAAZE001776 ATGCAGTTGAGTCATCAATTATCATTTGAAATTGGACTCCATGGATTTCTCCTCTGGGCTTCAATGGGTTTCTTGATACCTGTTGGAATTCTTATTATCAGAATCTCAAACAGAGAGCAATGTGGAAGAAGGGTCAGAATTCTGTTTTACATCCATGCTATTGTACAGATAGTGTCAATAGTTGTGGCGACAGCAGGGGCAGTAATGTCCATATTAAACTTTGACAACTCATTCAACAATAATCACCAGAAGATGGGTTTAGCCCTTTACGGTATCATATGGTTACAAGCCCTAATTGGGTTTCTGCGTCCATCAAGGGGAAGTGGGGGAAGAAGTATATGGTTTTTTGTGCATTGGATAATGGGAACAGCAGTTTCTGCCATGGGAATCCTCAATGTATACACAGGATTACAAGCCTACCACAAGAAAACATCAAAGGGTATAAAGCTATGGATCATTCTCTTCACTGCTCAAATATCTTTCATTGCCTTGTTCTATCTCTTCCAAGACAAATGGGAATACATTCACAAGCAAGGTGTCATCTTAGGCAATCAACTAGTGCAACCCACTGATCAAGAAGACACTAATTCCCCCATTCAAAACCACAAAAATGATTTGTTAACTCAACCTCCTTGTTAA

Network for GWHGAAZE001772

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03188.17	Cytochrom_B561	13	138	5.30E-09
PF00310.22	GATase_2	98	520	4.60E-178
PF04898.15	Glu_syn_central	548	839	2.40E-106
PF01645.18	Glu_synthase	899	1282	1.90E-159
PF01493.20	GXGXG	1364	1545	1.20E-73

Protein Sequence

>GWHPAAZE004016
MSVQSVPHIPQVLLSNVHSRNHTSSVFSTGNRFVFVDFVGLCSQSKRTRRRIGASSKKWSTIKAVFDQELVGTKSMKSEESKPKVANLGDILSERGACGVGFIANLENKASHEIIKDALTALGCMEHRGGCGADNDSGDGAGLMTSIPWDLFNDWANKNGIASFDNLHSGVGMVFLPKDVDLMNEAKTVIENIFKQEGLEVLAWRPVPVDTSIVGYYAKETMPNIQQVFVRMVKEENIDDIERELYVCRKLIEKAANSKSWGNELYFCSLSNQTIVYKGMLRSEVLGRFYYDLRSEIYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSRETSLKSPVWQGRENEIRPFGNSKASDSANLDSAAELLLRSGRSAEEALMILVPEAYKNHPTLMMKYPEAVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTVDNVVYVASEVGVLPMDESKVTMKGRLGPGMMITADLKSGQVYENTEVKKRVALSNPYGKWLNENMRSLAPANFLSTTIMENEAILRCQQAYGYSSEDVQMVIETMASQGKEPTFCMGDDIPLAILSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNLGKRGNILEVGPQNASQVILSNPVLNEGELDSLLKDPYLKSQILKTFFDIRKGVEGSLEKTIARLCEEADEAVRNGCQLLVLSDRSDELEPTRPAIPILLAVGAVHQHLIQNGLRMSASIIADTAQCFSTHQFACLIGYGASAICPYLALETCRQWRLSNRTVNLMRNGKMPTVTMEQAQKNFCKAVKSGLLKILSKMGISLLSSYCGAQIFEIYGLGKEVVDLAFCGSVSSIGGLTLDELARETLSFWVKAFSEDTTKRLENFGFIQFRPGGEYHGNNPEMSKLLHKAVRQKRESAYSVYQQHLANRPVNVLRDLLEFKSNRSPIPVGKVESASSIAQRFCTGGMSLGAISRETHESIAIAMNRLGGKSNSGEGGEDPIRWSPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNSKAKVSVKLVAEAGIGTVASGVTKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIENGLRERVILRVDGGFKSGVDVLMAAAMGADEYGFGSLAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPDDLVNFFLYVAEEVRGMLAQLGFEKLDDIIGHTELLRPRDISLVKTQHLDLSNMLLSVGLPKWSSSTIRKQEVHSNGPVLDDTLLSDAEILDAIENEKVVSKTVKIYNVDRAVCGRIAGVIAKKYGDTGFAGQLNLTFEGSAGQSFACFLTPGMNIRLVGEANDYVGKSMAGGELVVTSVKNTGFVPEEAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAQAVVEGTGDHCCEYMTGGCVIVLGKVGRNVAAGMTGGLAYILDEDDTLIPKINTEIVKMQRVVAPVGQMQLKSFIEAHVEKTGSSKGSAILKEWDKYLPLFWQLVPPSEEDTPEACAEYDQIATDRVTLQSA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00284	GLU, gltS	Microbial metabolism in diverse environments	map01120
		Glyoxylate and dicarboxylate metabolism	map00630
		Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006537	biological_process	glutamate biosynthetic process
GO:0015930	molecular_function	glutamate synthase activity
GO:0016638	molecular_function	oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.095
	SRR3591706	second leaf	2.570
	SRR3591707	mature leaf	0.469
	SRR3591708	Shoot apex	34.608
	SRR3591709	Stem	15.909
	SRR3591710	White floral bud	1.182
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	8.388
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.791
	SRR8316896	Juvenile bud stage	10.307
	SRR8316897	Juvenile bud stage	5.085
	SRR8316894	Third green stage	13.969
	SRR8316900	Third green stage	47.808
	SRR8316901	Third green stage	32.478
	SRR8316898	Complete white stage	0.814
	SRR8316899	Complete white stage	49.416
	SRR8316903	Complete white stage	0.946
	SRR8316902	Silver flowering stage	0.082
	SRR8316904	Silver flowering stage	0.111
	SRR8316905	Silver flowering stage	0.278
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.760
	SRR6706287	Light intensity 50%	2.201
	SRR6706288	Light intensity 20%	2.143
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.639
	CNS0095593	Slightly white alabastrum(diploid) 2	26.402
	CNS0095594	Slightly white alabastrum(diploid) 3	6.037
	CNS0095595	Whole white alabastrum(diploid) 2	16.759
	CNS0095596	Whole white alabastrum(diploid) 3	17.740
	CNS0095597	Whole white alabastrum(diploid) 4	5.315
	CNS0095598	Silvery flower (diploied) 1	0.442
	CNS0095599	Silvery flower (diploied) 2	0.919
	CNS0095600	Silvery flower (diploied) 3	0.573
	CNS0095601	Golden flower (diploid) 1	0.761
	CNS0095602	Golden flower (diploid) 2	0.165
	CNS0095603	Golden flower (diploid) 3	0.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.368
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.618
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.715
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.284
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.663
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.892
	CNS0095610	Silvery flower (tetraploid) 1	0.170
	CNS0095611	Silvery flower (tetraploid) 2	0.949
	CNS0095612	Silvery flower (tetraploid) 3	0.071
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.017
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	8.113
	CRR073298	Stem 2	12.072
	CRR073299	Stem 3	9.283
	CRR073300	Leaf 1	16.654
	CRR073301	Leaf 2	15.855
	CRR073302	Leaf 3	12.783
	CRR073303	Juvenile bud 1	12.097
	CRR073304	Juvenile bud 2	1.342
	CRR073305	Juvenile bud 3	23.381
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.084
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.578
	CRR073316	Gold flowering 2	0.901
	CRR073317	Gold flowering 3	0.208
	CRR073318	Tawny withering 1	6.402
	CRR073319	Tawny withering 2	3.730
	CRR073320	Tawny withering 3	9.534