Gene detail

Detail information of GWHGAAZE001766

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007049033.1	3.5115E-157	ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 3 [Theobroma cacao]
Swissprot	tr\|Q9SHJ8\|HIBC8_ARATH	5E-139	3-hydroxyisobutyryl-CoA hydrolase-like protein 5
trEMBL	tr\|A0A061DKM0\|A0A061DKM0_THECC	1E-157	ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 3 {ECO:0000313\|EMBL:EOX93190.1}
TAIR10	AT1G06550.1	3E-112	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60013697	60019074	+
GWHAAZE00000001	mRNA	60013697	60019074	+
GWHAAZE00000001	exon	60013697	60013729	+
GWHAAZE00000001	exon	60014297	60014380	+
GWHAAZE00000001	exon	60014926	60014989	+
GWHAAZE00000001	exon	60015095	60015168	+
GWHAAZE00000001	exon	60015607	60015690	+
GWHAAZE00000001	exon	60015822	60015906	+
GWHAAZE00000001	exon	60016189	60016274	+
GWHAAZE00000001	exon	60018388	60018509	+
GWHAAZE00000001	exon	60018606	60018666	+
GWHAAZE00000001	exon	60018937	60019074	+
GWHAAZE00000001	CDS	60013697	60013729	+
GWHAAZE00000001	CDS	60014297	60014380	+
GWHAAZE00000001	CDS	60014926	60014989	+
GWHAAZE00000001	CDS	60015095	60015168	+
GWHAAZE00000001	CDS	60015607	60015690	+
GWHAAZE00000001	CDS	60015822	60015906	+
GWHAAZE00000001	CDS	60016189	60016274	+
GWHAAZE00000001	CDS	60018388	60018509	+
GWHAAZE00000001	CDS	60018606	60018666	+
GWHAAZE00000001	CDS	60018937	60019074	+

Transcript Sequence
>GWHTAAZE001770 ATGGCAAAAGACTTGGCAGTCCCAGATGAAGAGGTTATTCTTGGTGAAGAGATAAACCATGTGCGATTGATCACCTTGAACCGGCCACGCCAGCTGAATGTCATTTCATCCAAAGTGGGAACTGGTCGTGCTTTTTCTGCTGGTGGGGATTTGAAAATGTTCTATGACGGCAAGCAAATAAAGGATTGTTGTCTTGAGGTGGTTTATAGAATGTACTGGCTTTGCTACCACATCCATACCTATAAGAAAACCCAGGTTGCTCTTGTTAACGGAATTTCCATGGGTGGTGGTGCTTCTTTGATGGTTCCGATGAAGTTTTCAGTTGTCACTGAGAAGACTGTTTTTGCTACACCGGAAGCAGGTATCGGGTTTCATGTTGACTGTGGTTTCTCATACATGCTTTCCCACCTTCCTGGGCGGCTGGGGGAATATTTGGCCTTAACAGGGGCAAGGCTGAACGGCAAGGAATTGGTTGCGGCCGGATTAGCAACCCATTTTGTTCCATCAGAGAAACTTTCCGAGCTAGAGAAACATCTGGTAAACCTAAACACTGGCGATGAGAGTGCAGTCAAAACAGCGATTGAAGAATTCTCCATAAATGTTCAGGTTGATGAAGAAAGTGTCTTGAACAAGCAGTCAATAATTGATGAGTGCTTTTCCAAGGATTCGGTAGAGGAGATCATACAATCATTTGAAGCTGAGGCAAGCAAAGAAGGAAATGCTTGGATTGCTGCAGTTCTCAAAGGATTAAAAAGATCATCTCCTACGGGGTTGAAGATAAACCTAAGATCGGTAATGTTTTCTTTTCATACATGTTTAGTTCCATCTTAA

Network for GWHGAAZE001766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	41	265	7.30E-73
PF03514.15	GRAS	3	373	4.10E-108

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.123
	SRR3591706	second leaf	40.244
	SRR3591707	mature leaf	40.287
	SRR3591708	Shoot apex	35.609
	SRR3591709	Stem	83.839
	SRR3591710	White floral bud	122.098
	SRR3591711	White flower	102.873
	SRR3591712	Green floral bud	65.695
	SRR3591713	Yellow flower	92.688
SRP173429	SRR8316895	Juvenile bud stage	37.106
	SRR8316896	Juvenile bud stage	46.449
	SRR8316897	Juvenile bud stage	7.729
	SRR8316894	Third green stage	18.933
	SRR8316900	Third green stage	79.333
	SRR8316901	Third green stage	86.902
	SRR8316898	Complete white stage	96.330
	SRR8316899	Complete white stage	107.127
	SRR8316903	Complete white stage	132.970
	SRR8316902	Silver flowering stage	175.980
	SRR8316904	Silver flowering stage	258.133
	SRR8316905	Silver flowering stage	147.522
	SRR8316906	Gold flowering stage	494.349
	SRR8316907	Gold flowering stage	469.083
	SRR8316908	Gold flowering stage	384.033
SRP132670	SRR6706286	Control	88.672
	SRR6706287	Light intensity 50%	104.916
	SRR6706288	Light intensity 20%	113.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.385
	CNS0095593	Slightly white alabastrum(diploid) 2	47.198
	CNS0095594	Slightly white alabastrum(diploid) 3	47.124
	CNS0095595	Whole white alabastrum(diploid) 2	49.651
	CNS0095596	Whole white alabastrum(diploid) 3	42.174
	CNS0095597	Whole white alabastrum(diploid) 4	43.133
	CNS0095598	Silvery flower (diploied) 1	51.105
	CNS0095599	Silvery flower (diploied) 2	48.275
	CNS0095600	Silvery flower (diploied) 3	139.307
	CNS0095601	Golden flower (diploid) 1	47.304
	CNS0095602	Golden flower (diploid) 2	109.430
	CNS0095603	Golden flower (diploid) 3	107.341
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.875
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.849
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.853
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.430
	CNS0095610	Silvery flower (tetraploid) 1	141.306
	CNS0095611	Silvery flower (tetraploid) 2	116.865
	CNS0095612	Silvery flower (tetraploid) 3	100.207
	CNS0095613	Golden flower (tetraploid) 1	95.178
	CNS0095614	Golden flower (tetraploid) 2	123.648
	CNS0095615	Golden flower (tetraploid) 3	100.174
CRA001975	CRR073297	Stem 1	41.789
	CRR073298	Stem 2	42.705
	CRR073299	Stem 3	36.884
	CRR073300	Leaf 1	83.128
	CRR073301	Leaf 2	66.266
	CRR073302	Leaf 3	76.404
	CRR073303	Juvenile bud 1	76.250
	CRR073304	Juvenile bud 2	158.539
	CRR073305	Juvenile bud 3	67.839
	CRR073306	Third green 1	193.720
	CRR073307	Third green 2	129.688
	CRR073308	Third green 3	156.945
	CRR073309	Second white 1	133.241
	CRR073310	Second white 2	148.475
	CRR073311	Second white 3	142.379
	CRR073312	Silver flowering 1	124.938
	CRR073313	Silver flowering 2	112.496
	CRR073314	Silver flowering 3	121.817
	CRR073315	Gold flowering 1	22.150
	CRR073316	Gold flowering 2	25.998
	CRR073317	Gold flowering 3	19.953
	CRR073318	Tawny withering 1	37.728
	CRR073319	Tawny withering 2	41.866
	CRR073320	Tawny withering 3	33.515