Gene detail

Detail information of GWHGAAZE001750

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009370377.1	1.1406E-103	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Pyrus x bretschneideri]
Swissprot	tr\|Q9LNG5\|PPP7L_ARATH	5E-41	Serine/threonine-protein phosphatase 7 long form homolog
trEMBL	tr\|V7CPX9\|V7CPX9_PHAVU	1E-59	Uncharacterized protein {ECO:0000313\|EMBL:ESW31300.1}
TAIR10	AT2G04865.1	1E-33	Aminotransferase-like, plant mobile domain family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59551800	59554329	+
GWHAAZE00000001	mRNA	59551800	59554329	+
GWHAAZE00000001	exon	59551800	59551835	+
GWHAAZE00000001	exon	59552278	59552493	+
GWHAAZE00000001	exon	59552581	59553273	+
GWHAAZE00000001	exon	59553361	59553528	+
GWHAAZE00000001	exon	59553625	59554329	+
GWHAAZE00000001	CDS	59551800	59551835	+
GWHAAZE00000001	CDS	59552278	59552493	+
GWHAAZE00000001	CDS	59552581	59553273	+
GWHAAZE00000001	CDS	59553361	59553528	+
GWHAAZE00000001	CDS	59553625	59554329	+

Transcript Sequence
>GWHTAAZE001754 ATGTTGGAAGAGAGACTTCTGATCAGAAAAGGCACTGATGTTACACCCGTGGCCTCGCCATATACCCCGGGTTATTCACCAAGTCAAACACAAACGGGCCAAAGGCGAAGAGGTGGTTCCGGCCCTGTGATACAATGCGGTGAAGGATCTAGCGGCGAAGCAGCCCCGCAAGAAGACGATGGAGGCGGTGGACAAAAGCATCCTTCGACGTTCAATGATCATGTAGCCTATGCAATTTGGCATCGAACACTGGAGGAGGGAAATTGTAAAAAATTGCACACAATGTGCCACTGGCTGAAATTAAAGTCCTGGGATTTATCGAAGGAGGTTGAAGGGGTGCAACAAAGAGTAAGGAATAGTGGTTTATTACCATTGATTGAGCACAATTACCGCTGCATCGACTATGTTGCCATCACAGCATTTGTTGAGAGATGGCAACCAGACACAAATACGTTCCACCTTCCATTCGGCGAGATGACGATCACGTTAGATGATGTGAGCTCTATACTTGGTGTTTCGGTGGTAGGGTCATGTTTTAGCGGTCGTTGGGGAGGAAAGGAAATTGGGTACAAAAATGCTATAGAATTAACAAAAGAGGGATTGGGTGTTAGTGAGGCAGAGGTAGTGAATGAGTGTGACAAGGCATTTTCGCTAAGGCTAGGATGGATAAAAGAAATGTGCCAGGGGCGTGCTACAAGCACTTCTACCGAAGTGGAATTGGATCAATGTGCTCGGGCCTATCTTCTCTACGTGCTAGGATGCGTAGCTTTTCCTGATAAGACAAAAACGAGAGTTTCGTGTTATTACTTAGGCGCTTTAAAAGACCTATCAAAGGTGGGGGAAATTGCATGGGGAATGGCAATCCTAGCGCATACATATCGACAATTAGGCCTTGCGTCGAAAGCCGGCGTGAAGACCATTAGCGGATGCTTAACACTCGTAGCGGCATGGATATTTGAGCATTTCGCCGATTGCACACGCCCGGTACCTAAAACGGGATACAAAGAGAATTTGCCGAGGATGTGCCGGTGGAAGCCTCAACAATGCAGCGGTGATACTGACGGAGCAATTGTAGCCTTGAGGGAAAGGCTAGATGACTTGACTGAATTTGATGTTTGTTGGGATCCGTATAATGGCCATAGAGATGCCCACCCGTTCCATGAGGTTTCCTATTACTGTGGGTTGATCGAATCCTTCGATGTCGTGGAGGCTTATTATCCGGAGCGGGTCCTTAGGCAGTTTGGGCGGGTACAGATAATTCCCACGATGCCGATGGTTTCGCACTTGTTAAATGCTCGAGGAAAGTCAAGTCAGGCATACAAGGTGGCCCATAGTGTCAATGCCTGGACTCATGATAATTGGCGTAATCATCTTCTGAACGACCAATTACGTTCTCGACCGGTCAGGGTTCCTTGGGAATGTGATAGCAAATATATGGAGTGGTTCTTGAAGATCACGCATCCATGCGTACAACCCTTAGACCTAAGAAAAACTCCACGAAGGATACGTGGGCCACAACAGGGAACAAATGTTTTGGGCTGCAATATGTGTGCTAAGAAGCAAGCGGGGATTGTAGCTGCTTTGGCATTGCTAGAGGGAGTTGTGTCTGGTGGACAAACACATGACTCTAATGACGCTGTAAATGAAGCTTATGACATCTTAAAGGCTGCAAGCCTTGACAATGAAGAAGAAGATAGAAGGCCTGAAAGCAGAACAAAGAGTAGGCATGATCCAGTGGCGACTGCACCAGCTCCAGCGATGACTATACCAGCTCCGTCAAAAGCCAAACCCCCACCAAAGAAGAGGCCAAAAAAGTAG

Network for GWHGAAZE001750

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10536.10	PMD	133	482	1.90E-58
PF03214.14	RGP	8	338	8.20E-159

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13379	RGP, UTM	Metabolic pathways	map01100
K13379	RGP, UTM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.104
	SRR3591706	second leaf	0.354
	SRR3591707	mature leaf	0.807
	SRR3591708	Shoot apex	1.003
	SRR3591709	Stem	0.230
	SRR3591710	White floral bud	0.045
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.125
	SRR8316896	Juvenile bud stage	0.401
	SRR8316897	Juvenile bud stage	0.117
	SRR8316894	Third green stage	0.128
	SRR8316900	Third green stage	0.078
	SRR8316901	Third green stage	0.072
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.028
	SRR8316903	Complete white stage	0.013
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.007
	SRR6706287	Light intensity 50%	0.014
	SRR6706288	Light intensity 20%	0.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.283
	CNS0095593	Slightly white alabastrum(diploid) 2	0.320
	CNS0095594	Slightly white alabastrum(diploid) 3	0.795
	CNS0095595	Whole white alabastrum(diploid) 2	0.134
	CNS0095596	Whole white alabastrum(diploid) 3	0.067
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.144
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.476
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.025
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.109
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.141
	CRR073298	Stem 2	0.024
	CRR073299	Stem 3	0.043
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.056
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.037
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000