Gene detail

Detail information of GWHGAAZE001713

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010054210.1	PREDICTED: protein TRANSPARENT TESTA 12-like [Eucalyptus grandis]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	Protein TRANSPARENT TESTA 12
trEMBL	tr\|A0A061DSU4\|A0A061DSU4_THECC	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR10	AT3G59030.1	MATE efflux family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58490262	58495979	+
GWHAAZE00000001	mRNA	58490262	58495979	+
GWHAAZE00000001	exon	58490262	58490573	+
GWHAAZE00000001	exon	58491419	58491963	+
GWHAAZE00000001	exon	58492455	58492541	+
GWHAAZE00000001	exon	58492680	58492736	+
GWHAAZE00000001	exon	58493109	58493347	+
GWHAAZE00000001	exon	58494096	58494214	+
GWHAAZE00000001	exon	58495593	58495679	+
GWHAAZE00000001	exon	58495824	58495979	+
GWHAAZE00000001	CDS	58490262	58490573	+
GWHAAZE00000001	CDS	58491419	58491963	+
GWHAAZE00000001	CDS	58492455	58492541	+
GWHAAZE00000001	CDS	58492680	58492736	+
GWHAAZE00000001	CDS	58493109	58493347	+
GWHAAZE00000001	CDS	58494096	58494214	+
GWHAAZE00000001	CDS	58495593	58495679	+
GWHAAZE00000001	CDS	58495824	58495895	+
GWHAAZE00000001	three_prime_UTR	58495896	58495979	+

Transcript Sequence
>GWHTAAZE001717 ATGGAAAGTGATGCAATGTATGAACCGCTGCTGCTAGGGCTAGACTCGCACGCGCAGATACCGGACTTATCATCACAAGCGATCGAAGAGTTTTTGGAGCACAAGCCAGTGGCGGTCCGGTGGTACCCACGGCTGGTGGCTTGGGAGTCGAGGCTGTTATGGCTACTGTCGGGATCTTCCATAGTAGTCTCCATTTTCAATTACATGCTTAGCTTTGTCACTCTCATGTTCACTGGCCATTTGGGTGCTTTGGAGCTTGCTGGTGCCTCCATTGCTAGTGTTGGCATTCAGGGCCTTGCTTATGGCATCATGTTGGGCATGGCAAGTGCTGTTCAAACAGTATGCGGACAGGCGTATGGAGCAAAGAAGTACGCGGCAATGGGAATCATATGCCAGAGAGCAATAGTCCTGCACGTAGGAGCGGCTATCCTCATCATGTTCCTGTACTGGAACTCAGGCTCAGTCCTCAGGGCCATAGGTCAGTCAGATAGCATAGCCGCGCAGGGCCAGGTTTTCGCAAGGGGATTGATCCCTCAACTCTATGCATTTGCAATAAGTTGCCCAATGCAAAGGTTCCTTCAAGCACAAAACATAGTGAACCCATTGGCTTATATGGCTGTTGGGTTGTTGATTTTGCACACTCTTCTCACATGGCTAGTGGTTTATGTGCTTGACTATGGGCTTATTGGAGCTGCTCTTACACTTAGTCTCTCATGGTTGATTTTGGTCATTACACAAGGCCTTTACATCATTTTTAGCCCTTCTTGCAAGGAAACTTGGACTGGTTTCTCTATAAAGGCCTTCAAGGGCATTTGGCCTTATTTCAAGCTAACTGTTTCCTCTGCCATTATGTTGTGTTTGGAGATATGGTACTTCCAGGGCCTTGTGCTCATATCAGGACTCCTTCCAGACCCAACAATCTCATTGGATTCCATTTCAATTTGCATGAATTACTTGAACTGGGACATGCAATTTATGTTGGGACTAGCTGCTGCAGCCAGTGTTAGGGTGAGTAATGAGCTAGGGGCAGGGCATCCAATGGTTGCAAAATTCTCAGTGATAGTGGTGAACTCAACAAGCATTCTAATAAGCATAGTATTCAGTGGATTAGTGCTTATATTCAGTGGTGGATTAAGCAAACTCTTTACCTCTGATTCTCAAGTCATTGCTGCTGTCTCCAATTTGACTCCACTCCTTGCCATCTCTGTCTTCTTGAATGGGATCCAACCCATTCTCTCAGGCGTGGCGATTGGGAGTGGATGGCAAGCAGTAGTGGCATATGTTAATCTGGCCACTTACTATATCATTGGTCTGCCCATTGGATGTGTTCTTGGTTTCAAAACTAACTTAGGAGTAGCAGGAATTTGGTGGGGAATGGTAGTTGGAGTTGTTTTGCAAACAATAGCTCTATTTATCCTAACAGTGAGAACAAACTGGAGTGCTGAGGTTGCAAAAGCTGCAGAGAGGTTGAAGCAATCTGCGGAAGAAGACGCGTTAGACCTTCTTGAAAGTATATGAGCAAATTTTGGAGCTTAATAGTATTAGAATTTTAGTATTAGGGACAAGGATGTTCATCTGTAGCTTCTTCTCTTATCTAGTTTC

Network for GWHGAAZE001713

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0011	map00941 Flavonoid biosynthesis GO:0005743 mitochondrial inner membrane GOslim:cellular_component GO:0042910 xenobiotic transmembrane transporter activity GOslim:molecular_function GO:0015297 antiporter activity GOslim:molecular_function GO:0050662 coenzyme binding GOslim:molecular_function map04022 cGMP-PKG signaling pathway map01110 Biosynthesis of secondary metabolites map04020 Calcium signaling pathway map04217 Necroptosis map04218 Cellular senescence

Module ID

Function Annotation

CFinderModule0011

map00941 Flavonoid biosynthesis
GO:0005743 mitochondrial inner membrane GOslim:cellular_component
GO:0042910 xenobiotic transmembrane transporter activity GOslim:molecular_function
GO:0015297 antiporter activity GOslim:molecular_function
GO:0050662 coenzyme binding GOslim:molecular_function
map04022 cGMP-PKG signaling pathway
map01110 Biosynthesis of secondary metabolites
map04020 Calcium signaling pathway
map04217 Necroptosis
map04218 Cellular senescence

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.19	MatE	60	219	4.10E-27
PF01554.19	MatE	281	441	1.60E-23
PF00153.28	Mito_carr	89	184	6.00E-23
PF00153.28	Mito_carr	191	286	1.20E-23
PF00153.28	Mito_carr	292	378	6.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05863	SLC25A4S, ANT	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Necroptosis	map04217
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005743	cellular_component	mitochondrial inner membrane
GO:0015297	molecular_function	antiporter activity
GO:0042910	molecular_function	xenobiotic transmembrane transporter activity
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.067
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.067
	SRR3591708	Shoot apex	1.449
	SRR3591709	Stem	12.492
	SRR3591710	White floral bud	4.581
	SRR3591711	White flower	1.930
	SRR3591712	Green floral bud	0.179
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.417
	SRR8316896	Juvenile bud stage	0.622
	SRR8316897	Juvenile bud stage	0.147
	SRR8316894	Third green stage	0.414
	SRR8316900	Third green stage	0.117
	SRR8316901	Third green stage	0.265
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.761
	SRR8316903	Complete white stage	1.173
	SRR8316902	Silver flowering stage	0.029
	SRR8316904	Silver flowering stage	0.048
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.113
	SRR6706287	Light intensity 50%	0.144
	SRR6706288	Light intensity 20%	0.246
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.380
	CNS0095593	Slightly white alabastrum(diploid) 2	3.461
	CNS0095594	Slightly white alabastrum(diploid) 3	8.209
	CNS0095595	Whole white alabastrum(diploid) 2	5.115
	CNS0095596	Whole white alabastrum(diploid) 3	1.590
	CNS0095597	Whole white alabastrum(diploid) 4	2.437
	CNS0095598	Silvery flower (diploied) 1	4.567
	CNS0095599	Silvery flower (diploied) 2	5.735
	CNS0095600	Silvery flower (diploied) 3	1.601
	CNS0095601	Golden flower (diploid) 1	8.186
	CNS0095602	Golden flower (diploid) 2	2.397
	CNS0095603	Golden flower (diploid) 3	2.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.795
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.151
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.125
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.224
	CNS0095610	Silvery flower (tetraploid) 1	0.110
	CNS0095611	Silvery flower (tetraploid) 2	1.498
	CNS0095612	Silvery flower (tetraploid) 3	0.409
	CNS0095613	Golden flower (tetraploid) 1	0.040
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.029
CRA001975	CRR073297	Stem 1	1.027
	CRR073298	Stem 2	0.551
	CRR073299	Stem 3	0.344
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.112
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.053
	CRR073306	Third green 1	0.002
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.092
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.066
	CRR073319	Tawny withering 2	1.389
	CRR073320	Tawny withering 3	1.098