Gene detail

Detail information of GWHGAAZE001699

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007029237.1	2.7299E-142	UPF0510 protein INM02 [Theobroma cacao]
trEMBL	tr\|A0A061F5G1\|A0A061F5G1_THECC	1E-142	UPF0510 protein INM02 {ECO:0000313\|EMBL:EOY09739.1}
TAIR10	AT1G65270.3	1E-90	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57969450	57977054	+
GWHAAZE00000001	mRNA	57969450	57977054	+
GWHAAZE00000001	exon	57969450	57969866	+
GWHAAZE00000001	exon	57970556	57970618	+
GWHAAZE00000001	exon	57970725	57970820	+
GWHAAZE00000001	exon	57971890	57971937	+
GWHAAZE00000001	exon	57973581	57973652	+
GWHAAZE00000001	exon	57974255	57974297	+
GWHAAZE00000001	exon	57974408	57974484	+
GWHAAZE00000001	exon	57975430	57975488	+
GWHAAZE00000001	exon	57976418	57976508	+
GWHAAZE00000001	exon	57976896	57977054	+
GWHAAZE00000001	CDS	57969450	57969866	+
GWHAAZE00000001	CDS	57970556	57970618	+
GWHAAZE00000001	CDS	57970725	57970820	+
GWHAAZE00000001	CDS	57971890	57971937	+
GWHAAZE00000001	CDS	57973581	57973652	+
GWHAAZE00000001	CDS	57974255	57974297	+
GWHAAZE00000001	CDS	57974408	57974484	+
GWHAAZE00000001	CDS	57975430	57975488	+
GWHAAZE00000001	CDS	57976418	57976508	+
GWHAAZE00000001	CDS	57976896	57977054	+

Transcript Sequence
>GWHTAAZE001703 CGGACGATACATGGTGGAAACCAGTACAGTTTCAACTCTTCTTTCAACCTAAGCAAAGCAAAAGCAAGAGCAATGAGAACCAAATCCCTACTTCACTTGTTTTTGTTACTGAATTTATGCATCTTCTTCTTCTCTTCGTTGATTACATCGTTTCAATCCGATGAGCTCCTTTTTGATGACGAAGAATTTGGATTAGAAGGGGCGAGATCCTCCGAGGATCTCGACCTAACCAGCTCTCATTCTGTTCATCCTCCTCCTATACAGCCTGTTCATAGTATTGGTAGTAGAAGGAGGCCGAGCGATCAGGATTTGGACAGCAAGGTTCAGTTCTCGCTTGAGCATGCTTTCGGAGATTCCGAATTCTCCCCCGCCGGCACCTTCACTGCTCGCATCAAGACCTGGCCTCACGGTGGACAGACCCTCACAAAGCTTCGGTTCTCAAGGAATGATTTTAGTGGAACAGATAAGGAGAGCTTCAAAGAACTACTGGAAGGGGATGACTTCTATAGGATAAGATTACCCTCAAATGTGTTAAGCCCTCCTGGGAGGGACTACATTATTTCGTCAGTGAAAGCAAGATGTCTTCCACGAAATGGCTTGGACGAGCATTTTGTTATACACATGGACGGTATTAATGTTTTGGCTGTTAATTACGGATCTCCTGGGGCGTGCCAGTATCCTCGGCAATTTAAACTTGCTAGCCAGATTGTGCGGGGGAGAAATGCTACATTGAACAAGGTTGTTGTTGACTATGACCTTGGCTCTGGGGAACTGATACATCATAAGGGTAAAGGCACTGCTTTGGCACTACATGTGCCTTCAAGATGGTCTTTCAACTCGCATACAGTCTTAAAGAACAGCGAGCAGGCACCAAGAACCCCAGCATTCTCTGAAGACATTGGTGGTGGGGAGATAGGAGAGGAAGAAGGTGTACAGCCACCTGAAAGGTCCTTTTGGGCTAAATATTGGATGTATTTGATCCCTCTTGGACTTATTGTGATGAATGCTGTAACCCAAGCTATGAACATGCCCGAAGAACAGGCAGGTGGTCAACCAGCCTCTCAAGCTCAGCAGTCAATCGGTGCAGCCCCTCGTGGGCAAAGTGCTGCTGTACGAAGACGATGA

Network for GWHGAAZE001699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	91	346	3.30E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.024
	SRR3591706	second leaf	29.192
	SRR3591707	mature leaf	23.683
	SRR3591708	Shoot apex	59.668
	SRR3591709	Stem	46.841
	SRR3591710	White floral bud	40.903
	SRR3591711	White flower	48.947
	SRR3591712	Green floral bud	59.493
	SRR3591713	Yellow flower	44.541
SRP173429	SRR8316895	Juvenile bud stage	34.736
	SRR8316896	Juvenile bud stage	51.539
	SRR8316897	Juvenile bud stage	22.716
	SRR8316894	Third green stage	22.702
	SRR8316900	Third green stage	60.149
	SRR8316901	Third green stage	62.973
	SRR8316898	Complete white stage	29.635
	SRR8316899	Complete white stage	80.952
	SRR8316903	Complete white stage	38.089
	SRR8316902	Silver flowering stage	23.597
	SRR8316904	Silver flowering stage	31.235
	SRR8316905	Silver flowering stage	14.296
	SRR8316906	Gold flowering stage	47.053
	SRR8316907	Gold flowering stage	47.208
	SRR8316908	Gold flowering stage	48.238
SRP132670	SRR6706286	Control	65.119
	SRR6706287	Light intensity 50%	64.801
	SRR6706288	Light intensity 20%	70.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.972
	CNS0095593	Slightly white alabastrum(diploid) 2	48.141
	CNS0095594	Slightly white alabastrum(diploid) 3	47.424
	CNS0095595	Whole white alabastrum(diploid) 2	37.940
	CNS0095596	Whole white alabastrum(diploid) 3	47.946
	CNS0095597	Whole white alabastrum(diploid) 4	31.208
	CNS0095598	Silvery flower (diploied) 1	19.866
	CNS0095599	Silvery flower (diploied) 2	28.035
	CNS0095600	Silvery flower (diploied) 3	49.601
	CNS0095601	Golden flower (diploid) 1	19.691
	CNS0095602	Golden flower (diploid) 2	40.377
	CNS0095603	Golden flower (diploid) 3	39.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.769
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.033
	CNS0095610	Silvery flower (tetraploid) 1	40.201
	CNS0095611	Silvery flower (tetraploid) 2	45.721
	CNS0095612	Silvery flower (tetraploid) 3	32.209
	CNS0095613	Golden flower (tetraploid) 1	23.617
	CNS0095614	Golden flower (tetraploid) 2	32.108
	CNS0095615	Golden flower (tetraploid) 3	33.942
CRA001975	CRR073297	Stem 1	63.162
	CRR073298	Stem 2	58.272
	CRR073299	Stem 3	67.975
	CRR073300	Leaf 1	75.431
	CRR073301	Leaf 2	65.586
	CRR073302	Leaf 3	85.686
	CRR073303	Juvenile bud 1	73.917
	CRR073304	Juvenile bud 2	71.491
	CRR073305	Juvenile bud 3	62.078
	CRR073306	Third green 1	27.056
	CRR073307	Third green 2	28.673
	CRR073308	Third green 3	29.927
	CRR073309	Second white 1	35.164
	CRR073310	Second white 2	28.467
	CRR073311	Second white 3	29.857
	CRR073312	Silver flowering 1	27.195
	CRR073313	Silver flowering 2	33.228
	CRR073314	Silver flowering 3	22.125
	CRR073315	Gold flowering 1	31.354
	CRR073316	Gold flowering 2	39.724
	CRR073317	Gold flowering 3	36.494
	CRR073318	Tawny withering 1	64.955
	CRR073319	Tawny withering 2	62.630
	CRR073320	Tawny withering 3	66.013