Gene detail

Detail information of GWHGAAZE001693

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007029254.1	2.3075E-100	Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 3 [Theobroma cacao]
Swissprot	tr\|Q42533\|BCCP1_ARATH	5E-74	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A061EY97\|A0A061EY97_THECC	9E-101	Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 3 {ECO:0000313\|EMBL:EOY09756.1}
TAIR10	AT5G16390.1	2E-31	chloroplastic acetylcoenzyme A carboxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57883550	57888881	+
GWHAAZE00000001	mRNA	57883550	57888881	+
GWHAAZE00000001	exon	57883550	57883863	+
GWHAAZE00000001	exon	57885417	57885747	+
GWHAAZE00000001	exon	57885864	57885935	+
GWHAAZE00000001	exon	57888673	57888738	+
GWHAAZE00000001	exon	57888858	57888881	+
GWHAAZE00000001	CDS	57883550	57883863	+
GWHAAZE00000001	CDS	57885417	57885747	+
GWHAAZE00000001	CDS	57885864	57885935	+
GWHAAZE00000001	CDS	57888673	57888738	+
GWHAAZE00000001	CDS	57888858	57888881	+

Transcript Sequence
>GWHTAAZE001697 ATGCAGGGTTTCCGGTGCAGTTCGAACCATTCATCTGTGGTGAAAGCCCAACTAAATGAGGTAAGGTTCTCTCAATGGTTTTCATTAGAGAATCTGTTTTCCAGCTTTAGTTCCTTCATGAACACATTTTTCGAGCCTTCTGTTGCCTTCAAGGTTGCTGTTGATGGACCCTCAGATGCTGCTTCAGCAGACCCTTCTACCAAATTGGAAGTACATAATGGAACTGAAGCCAACGATGATAAGCCATCATCTGAGCCCTCTGCTTCAGAAGAATCAATATCTGATTTTTTTGCTCAAGTTTCAAGTCTTGTCAAGCTAGTTGATTCTAGGGATATTGTAGAGTTGCAGTTGAAACAGCTAGACTGTGAGCTTACAATACGTAAGAAGGAGGCCTTGCCTCAGCCACCTCCTCCTGCCCCAGCTGTTATGATGCAGTCACCCCCTCCACCAGCTGTGGTGCCACCACCTTACCAAGCTGCCCAACCGGTGGCTCCGTCAGCACCCTCTGCACCGGCACCTTCTTCAGCAGCAACTCAAGCACCTTCTCTGCCTGAACCTAAGTCTTCTAACCTTCCACCTCTTAAATCCCCCATGGCAGGGACATTCTATCGATGTCCAGCACCCGGTGAACCACCACTTGTTAAGGTTGGAGACAAGGTAAGGAAGGGACAAGTTCTATGCATCATTGAGGCCATGAAACTGATGAATGAAATAGAAGCTGATCGATCAGGAACAATACTTGAGGTAGTTGCAGAAGATGGCCAACCTGTCAGTGTTGATACACCTCTGTTTGTGATTGAACCTTAA

Network for GWHGAAZE001693

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	194	266	5.80E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01647	CS, gltA	Metabolic pathways	map01100
		Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Fatty acid metabolism	map01212
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0009317	cellular_component	acetyl-CoA carboxylase complex
GO:0003989	molecular_function	acetyl-CoA carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.221
	SRR3591706	second leaf	67.122
	SRR3591707	mature leaf	29.602
	SRR3591708	Shoot apex	84.204
	SRR3591709	Stem	36.666
	SRR3591710	White floral bud	29.302
	SRR3591711	White flower	31.328
	SRR3591712	Green floral bud	42.814
	SRR3591713	Yellow flower	26.130
SRP173429	SRR8316895	Juvenile bud stage	31.230
	SRR8316896	Juvenile bud stage	38.192
	SRR8316897	Juvenile bud stage	25.997
	SRR8316894	Third green stage	21.177
	SRR8316900	Third green stage	53.206
	SRR8316901	Third green stage	53.133
	SRR8316898	Complete white stage	10.353
	SRR8316899	Complete white stage	38.677
	SRR8316903	Complete white stage	22.594
	SRR8316902	Silver flowering stage	9.288
	SRR8316904	Silver flowering stage	11.608
	SRR8316905	Silver flowering stage	6.110
	SRR8316906	Gold flowering stage	14.955
	SRR8316907	Gold flowering stage	18.760
	SRR8316908	Gold flowering stage	14.443
SRP132670	SRR6706286	Control	83.629
	SRR6706287	Light intensity 50%	82.162
	SRR6706288	Light intensity 20%	91.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.789
	CNS0095593	Slightly white alabastrum(diploid) 2	26.118
	CNS0095594	Slightly white alabastrum(diploid) 3	29.774
	CNS0095595	Whole white alabastrum(diploid) 2	25.472
	CNS0095596	Whole white alabastrum(diploid) 3	29.318
	CNS0095597	Whole white alabastrum(diploid) 4	22.205
	CNS0095598	Silvery flower (diploied) 1	24.404
	CNS0095599	Silvery flower (diploied) 2	19.300
	CNS0095600	Silvery flower (diploied) 3	27.134
	CNS0095601	Golden flower (diploid) 1	25.540
	CNS0095602	Golden flower (diploid) 2	27.585
	CNS0095603	Golden flower (diploid) 3	26.619
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.371
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.830
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.969
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.906
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.788
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.527
	CNS0095610	Silvery flower (tetraploid) 1	26.982
	CNS0095611	Silvery flower (tetraploid) 2	37.880
	CNS0095612	Silvery flower (tetraploid) 3	27.215
	CNS0095613	Golden flower (tetraploid) 1	22.769
	CNS0095614	Golden flower (tetraploid) 2	26.785
	CNS0095615	Golden flower (tetraploid) 3	20.472
CRA001975	CRR073297	Stem 1	69.075
	CRR073298	Stem 2	64.983
	CRR073299	Stem 3	56.140
	CRR073300	Leaf 1	74.209
	CRR073301	Leaf 2	69.760
	CRR073302	Leaf 3	73.231
	CRR073303	Juvenile bud 1	56.279
	CRR073304	Juvenile bud 2	46.768
	CRR073305	Juvenile bud 3	62.894
	CRR073306	Third green 1	23.508
	CRR073307	Third green 2	15.291
	CRR073308	Third green 3	21.029
	CRR073309	Second white 1	20.890
	CRR073310	Second white 2	13.633
	CRR073311	Second white 3	19.787
	CRR073312	Silver flowering 1	12.558
	CRR073313	Silver flowering 2	10.116
	CRR073314	Silver flowering 3	12.791
	CRR073315	Gold flowering 1	32.258
	CRR073316	Gold flowering 2	53.599
	CRR073317	Gold flowering 3	46.768
	CRR073318	Tawny withering 1	34.934
	CRR073319	Tawny withering 2	25.667
	CRR073320	Tawny withering 3	37.268