Gene detail

Detail information of GWHGAAZE001692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW51315.1	2.00801E-58	hypothetical protein EUGRSUZ_J00871 [Eucalyptus grandis]
Swissprot	tr\|Q9FID8\|Y5900_ARATH	5E-55	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|A0A059AD51\|A0A059AD51_EUCGR	7E-59	Uncharacterized protein {ECO:0000313\|EMBL:KCW51315.1}
TAIR10	AT5G39000.1	6E-50	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57852640	57855030	-
GWHAAZE00000001	mRNA	57852640	57855030	-
GWHAAZE00000001	exon	57852640	57852887	-
GWHAAZE00000001	exon	57853935	57854308	-
GWHAAZE00000001	exon	57854405	57854607	-
GWHAAZE00000001	exon	57854743	57855030	-
GWHAAZE00000001	CDS	57854743	57855030	-
GWHAAZE00000001	CDS	57854405	57854607	-
GWHAAZE00000001	CDS	57853935	57854308	-
GWHAAZE00000001	CDS	57852640	57852887	-

Transcript Sequence
>GWHTAAZE001696 ATGGCTGTACCGGTAACACCACTGCCGGAGCACTTCAACTCGCTGCCGTTGCCTTTGCCGGAGCAATTATGCCGTGCCTTCTCCTTTGCCGAGATCTTATCCGCAACTAACAACTTCGACGATTCATTGGTTATTGGGCAAGGCGAATTTGGTAAAGTATACAAAGGGGTCATCGACAACGGGGCAAGTATTGTTGCTATAAAACGGCTAAGCTCTGCATCTAAGCAAGGAGATTCCGAATTCAGAACCGAGATTGAGTTGCTCTCAAAATTTCGGCACTCTCATATTCGTCTCAAGATTTGTCTAGGAGCTGCTCGTGGCTTGGATTACCTTCATACATGTACTGGTGTCATACATCGGGACATGAAGAGTTCGAACATCCTGGTAGATAAGAATTGCGCAGCTAAAGTTCCAGACTTTGGTTTGTCTAGAATCAACCCAATTGATCAGTCTTACACTCATATCACCACAAACGTAAAAGGGACAACGGGGCGAGCGGTGGATTTTGCACTTGATGAAGAGCAATGGAGTCTTGCTCGGTGGGCCCAATGCTATATTGAAAAAGGAACGCTTCATCGTGTAATCAATCCTAATCTGTGGTTGGAAATCTTGCCTGAATCTTTGAAAGAGTTTGTGCGAATTGCAAATCAATGCTTATGTTATCGGCCGAAAAAACGACCTACAATGACTCAAGTCGTGAGCTCACTCGAATTGGTGTTGGCATTGCAGCTAGGACACAAAGATTCTTCTGCATTTGAAATGGAAATTATTTGTACAAGTGAGTCAGATGAAATCATAGAAAATGCTGACTCAACAATGGTACAAGAAGAAAGGCAATCGTTTATGTTCTCTGACTACGCATCAGATGATGGTCCATTACCTGCAATAGAGGGCCTCCAAATTTCTGGTGAACCTTTTCCAGGACGGGAGCTACAAGCAAGCGGGTATTCTATTAATGGAACAAGACGTTGTAACTTTTACTGGGTGCTTCATTCGGAAGATGGCTCTGTTAAGTACATAGATGGGGCAGCACAACCAAGCTATCTAGTTACCGCGGATGATGTTGGTACAACCCTTGCTGTTGTAGTCCAGCCGCTGGATGACAGAAAGTGA

Network for GWHGAAZE001692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	44	96	2.90E-08
PF00069.26	Pkinase	100	158	3.00E-12
PF01490.19	Aa_trans	43	219	3.90E-31
PF01490.19	Aa_trans	229	377	2.00E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13946	AUX1, LAX	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.015
	SRR3591706	second leaf	0.082
	SRR3591707	mature leaf	0.037
	SRR3591708	Shoot apex	0.090
	SRR3591709	Stem	0.158
	SRR3591710	White floral bud	0.222
	SRR3591711	White flower	0.370
	SRR3591712	Green floral bud	0.286
	SRR3591713	Yellow flower	0.256
SRP173429	SRR8316895	Juvenile bud stage	0.777
	SRR8316896	Juvenile bud stage	0.744
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.741
	SRR8316900	Third green stage	1.367
	SRR8316901	Third green stage	2.014
	SRR8316898	Complete white stage	0.754
	SRR8316899	Complete white stage	3.145
	SRR8316903	Complete white stage	1.080
	SRR8316902	Silver flowering stage	0.656
	SRR8316904	Silver flowering stage	1.150
	SRR8316905	Silver flowering stage	0.483
	SRR8316906	Gold flowering stage	0.939
	SRR8316907	Gold flowering stage	0.774
	SRR8316908	Gold flowering stage	0.760
SRP132670	SRR6706286	Control	1.536
	SRR6706287	Light intensity 50%	1.447
	SRR6706288	Light intensity 20%	1.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.382
	CNS0095593	Slightly white alabastrum(diploid) 2	0.323
	CNS0095594	Slightly white alabastrum(diploid) 3	0.547
	CNS0095595	Whole white alabastrum(diploid) 2	0.429
	CNS0095596	Whole white alabastrum(diploid) 3	0.734
	CNS0095597	Whole white alabastrum(diploid) 4	0.575
	CNS0095598	Silvery flower (diploied) 1	1.123
	CNS0095599	Silvery flower (diploied) 2	1.074
	CNS0095600	Silvery flower (diploied) 3	1.244
	CNS0095601	Golden flower (diploid) 1	0.412
	CNS0095602	Golden flower (diploid) 2	1.565
	CNS0095603	Golden flower (diploid) 3	1.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.764
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.274
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.746
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.708
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.379
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.198
	CNS0095610	Silvery flower (tetraploid) 1	2.418
	CNS0095611	Silvery flower (tetraploid) 2	1.439
	CNS0095612	Silvery flower (tetraploid) 3	0.472
	CNS0095613	Golden flower (tetraploid) 1	0.593
	CNS0095614	Golden flower (tetraploid) 2	1.907
	CNS0095615	Golden flower (tetraploid) 3	0.962
CRA001975	CRR073297	Stem 1	1.017
	CRR073298	Stem 2	0.717
	CRR073299	Stem 3	0.554
	CRR073300	Leaf 1	1.899
	CRR073301	Leaf 2	1.605
	CRR073302	Leaf 3	0.322
	CRR073303	Juvenile bud 1	0.544
	CRR073304	Juvenile bud 2	0.251
	CRR073305	Juvenile bud 3	0.712
	CRR073306	Third green 1	0.009
	CRR073307	Third green 2	0.043
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.162
	CRR073310	Second white 2	0.072
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.268
	CRR073313	Silver flowering 2	0.009
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.288
	CRR073316	Gold flowering 2	0.825
	CRR073317	Gold flowering 3	0.115
	CRR073318	Tawny withering 1	0.341
	CRR073319	Tawny withering 2	0.873
	CRR073320	Tawny withering 3	0.404