Gene detail

Detail information of GWHGAAZE001683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU30756.1	1.63133E-67	hypothetical protein MIMGU_mgv1a018041mg [Erythranthe guttata]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	3E-19	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A022QS53\|A0A022QS53_ERYGU	6E-68	Uncharacterized protein {ECO:0000313\|EMBL:EYU30756.1}
TAIR10	AT3G06240.1	6E-18	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57739975	57741168	+
GWHAAZE00000001	mRNA	57739975	57741168	+
GWHAAZE00000001	exon	57739975	57741168	+
GWHAAZE00000001	CDS	57739975	57741168	+

Transcript Sequence
>GWHTAAZE001687 ATGTCTGACTATATTCCTCCAGAACTCATAGTTAATATCCTCTCATGGCTGCCTCCAAAGTCTCTTCTTCGATTCAGGTGCGTATGCAAATCATGGTGTTCTCTAATTTCAAGCCCTAATTTCATCGACATTCACACTAACCAACTCAATGCTTCTTCGAATCACAACACTCGCTTACTCGCCATGCGCTGGACTGGCCGTGTAAGTTACAGTAACAAAGTCTATCCTCTCGATTTCGATAGCGAGATGTTACGCGTAGACGACGAGAGTGTCAGAATTGATTGCCCATTTCCCATTCCAGCACAGTGGTGCTGCACTTCTTGTAATGGCTTGTTTCTTGTTTGTTGTTCCGTCTTTCAAGGTCTATGGAATCCTTCCATTAGAAGAAAACTGGTTCTCGGCGAGCCCCTATTCGGGTTCGTCACGAAACGTAGGTATGTTAGTGCATTGGGTTTCAATCCAAAAACTAATGATTACAAGATTGTCAATATTGGATATGAACGAATGCTCGGTGGATCCCGTTGTAATGGAGTTAGGGTTTATTCAGTTAAGGACGGGACTTGGAGGGGCATTAGGGCCCATGCTCCTCCCTATGACATTGTCCGCAACATGCCTTCGAATGTTGTTGTAAATGGATCTCTGTACTGGATTGCTAACCACGGGGTCTCGGGGACTTCTGACTTTCGGGCGATTAATCCGCCTAATTTGTTTGATACAGTTGACGATCTAGCGATTAATTCAATTATGGTGTTTGATACAGTTGAAGAGGTATTTCGCGAGATAATGTTGCCGAAAAGTTTAGTGTCCATAGCGACTTACAACTTGCGTCTCAAGGCAATTGGGGATTCACTTTCGGTCATCCAATATGAAAAACTTTGCAAACTTCATTCGGTATGGGTGATGAAAGAATATGGTGCAGTAGAGTCGTGGAGTAAAAAATTTAGTTTTGATTTTGAGTTGGGTTTTGGAAGGATATTGGGTTTTAGGGAGAATGGCGAAGTGGTATTGCCAAATAAAGACAAGGATTTGGTAGCTTATAACCCAATTACGCGACAAAGCACGAACCTTACGGCTGGTGGCCATAATAACTTATATTATGGCACTACCTACAAGGAGAGCTTAGGATTACTCCTCGAAGGAGAACAGATTTCAGCAACGCAAACATGTGAAGTCGAACCTATTTCATCCGGATAG

Network for GWHGAAZE001683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	4.30E-11
PF07734.14	FBA_1	208	324	1.60E-07
PF00071.23	Ras	14	175	6.20E-12
PF08356.13	EF_assoc_2	229	313	3.30E-32
PF08355.13	EF_assoc_1	350	418	5.30E-20

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K07870	RHOT1, ARHT1	Mitophagy - animal	map04137
K07870	RHOT1, ARHT1	Apoptosis - fly	map04214

Gene Ontology

GO term	Ontology	Name
GO:0007005	biological_process	mitochondrion organization
GO:0031307	cellular_component	integral component of mitochondrial outer membrane
GO:0005509	molecular_function	calcium ion binding
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.922
	SRR3591706	second leaf	0.709
	SRR3591707	mature leaf	0.270
	SRR3591708	Shoot apex	1.042
	SRR3591709	Stem	0.121
	SRR3591710	White floral bud	0.984
	SRR3591711	White flower	0.620
	SRR3591712	Green floral bud	1.522
	SRR3591713	Yellow flower	0.303
SRP173429	SRR8316895	Juvenile bud stage	1.303
	SRR8316896	Juvenile bud stage	1.054
	SRR8316897	Juvenile bud stage	0.640
	SRR8316894	Third green stage	0.906
	SRR8316900	Third green stage	1.416
	SRR8316901	Third green stage	1.235
	SRR8316898	Complete white stage	0.346
	SRR8316899	Complete white stage	2.377
	SRR8316903	Complete white stage	0.577
	SRR8316902	Silver flowering stage	0.284
	SRR8316904	Silver flowering stage	0.638
	SRR8316905	Silver flowering stage	0.114
	SRR8316906	Gold flowering stage	0.278
	SRR8316907	Gold flowering stage	0.036
	SRR8316908	Gold flowering stage	0.410
SRP132670	SRR6706286	Control	1.677
	SRR6706287	Light intensity 50%	1.674
	SRR6706288	Light intensity 20%	1.970
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.917
	CNS0095593	Slightly white alabastrum(diploid) 2	0.898
	CNS0095594	Slightly white alabastrum(diploid) 3	0.782
	CNS0095595	Whole white alabastrum(diploid) 2	2.167
	CNS0095596	Whole white alabastrum(diploid) 3	0.860
	CNS0095597	Whole white alabastrum(diploid) 4	1.158
	CNS0095598	Silvery flower (diploied) 1	1.381
	CNS0095599	Silvery flower (diploied) 2	0.845
	CNS0095600	Silvery flower (diploied) 3	1.160
	CNS0095601	Golden flower (diploid) 1	1.228
	CNS0095602	Golden flower (diploid) 2	1.179
	CNS0095603	Golden flower (diploid) 3	0.924
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.222
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.621
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.270
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.230
	CNS0095610	Silvery flower (tetraploid) 1	1.495
	CNS0095611	Silvery flower (tetraploid) 2	2.090
	CNS0095612	Silvery flower (tetraploid) 3	1.185
	CNS0095613	Golden flower (tetraploid) 1	0.478
	CNS0095614	Golden flower (tetraploid) 2	0.713
	CNS0095615	Golden flower (tetraploid) 3	0.326
CRA001975	CRR073297	Stem 1	3.394
	CRR073298	Stem 2	2.927
	CRR073299	Stem 3	2.176
	CRR073300	Leaf 1	2.346
	CRR073301	Leaf 2	1.553
	CRR073302	Leaf 3	2.796
	CRR073303	Juvenile bud 1	1.099
	CRR073304	Juvenile bud 2	0.962
	CRR073305	Juvenile bud 3	1.114
	CRR073306	Third green 1	0.176
	CRR073307	Third green 2	0.342
	CRR073308	Third green 3	0.107
	CRR073309	Second white 1	0.117
	CRR073310	Second white 2	0.025
	CRR073311	Second white 3	0.018
	CRR073312	Silver flowering 1	0.108
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.223
	CRR073315	Gold flowering 1	0.575
	CRR073316	Gold flowering 2	0.896
	CRR073317	Gold flowering 3	0.323
	CRR073318	Tawny withering 1	0.613
	CRR073319	Tawny withering 2	0.244
	CRR073320	Tawny withering 3	0.441