Detail information of GWHGAAZE001628


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003621661.14.94318E-46SKP1-like protein [Medicago truncatula]
Swissprottr|Q9FHW7|SKP1B_ARATH2E-43SKP1-like protein 1B
trEMBLtr|G7KSZ5|G7KSZ5_MEDTR2E-46SCF ubiquitin ligase, SKP1 component {ECO:0000313|EMBL:AES77879.1}
TAIR10AT5G42190.13E-35E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5502487555025288-
GWHAAZE00000001mRNA5502487555025288-
GWHAAZE00000001exon5502487555025288-
GWHAAZE00000001CDS5502487555025288-
Transcript Sequence

Network for GWHGAAZE001628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.16Skp1_POZ2491.70E-15
PF01466.20Skp1891357.30E-16
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.259
SRR3591706second leaf0.000
SRR3591707mature leaf0.350
SRR3591708Shoot apex0.226
SRR3591709Stem0.060
SRR3591710White floral bud2.113
SRR3591711White flower4.522
SRR3591712Green floral bud1.138
SRR3591713Yellow flower8.270
SRP173429 SRR8316895Juvenile bud stage 3.169
SRR8316896Juvenile bud stage 3.889
SRR8316897Juvenile bud stage 2.446
SRR8316894Third green stage 2.143
SRR8316900Third green stage 1.075
SRR8316901Third green stage 1.312
SRR8316898Complete white stage 0.911
SRR8316899Complete white stage 0.948
SRR8316903Complete white stage 1.270
SRR8316902Silver flowering stage1.454
SRR8316904Silver flowering stage3.883
SRR8316905Silver flowering stage0.615
SRR8316906Gold flowering stage 7.386
SRR8316907Gold flowering stage 8.136
SRR8316908Gold flowering stage 14.804
SRP132670SRR6706286Control1.800
SRR6706287Light intensity 50%0.768
SRR6706288Light intensity 20%1.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.700
CNS0095593Slightly white alabastrum(diploid) 23.015
CNS0095594Slightly white alabastrum(diploid) 33.030
CNS0095595Whole white alabastrum(diploid) 21.199
CNS0095596Whole white alabastrum(diploid) 31.337
CNS0095597Whole white alabastrum(diploid) 40.766
CNS0095598Silvery flower (diploied) 17.511
CNS0095599Silvery flower (diploied) 25.431
CNS0095600Silvery flower (diploied) 34.579
CNS0095601Golden flower (diploid) 19.057
CNS0095602Golden flower (diploid) 27.730
CNS0095603Golden flower (diploid) 38.425
CNS0095604Slightly white alabastrum(tetraploid) 11.592
CNS0095605Slightly white alabastrum(tetraploid) 21.392
CNS0095606Slightly white alabastrum(tetraploid) 33.121
CNS0095607Whole white alabastrum(tetraploid) 10.314
CNS0095608Whole white alabastrum(tetraploid) 20.341
CNS0095609Whole white alabastrum(tetraploid) 31.237
CNS0095610Silvery flower (tetraploid) 14.389
CNS0095611Silvery flower (tetraploid) 26.832
CNS0095612Silvery flower (tetraploid) 33.458
CNS0095613Golden flower (tetraploid) 14.158
CNS0095614Golden flower (tetraploid) 24.877
CNS0095615Golden flower (tetraploid) 34.747
CRA001975CRR073297Stem 12.120
CRR073298Stem 22.217
CRR073299Stem 32.581
CRR073300Leaf 10.227
CRR073301Leaf 20.755
CRR073302Leaf 30.217
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.084
CRR073305Juvenile bud 30.000
CRR073306Third green 10.510
CRR073307Third green 20.445
CRR073308Third green 31.414
CRR073309Second white 11.706
CRR073310Second white 22.447
CRR073311Second white 31.210
CRR073312Silver flowering 12.135
CRR073313Silver flowering 20.529
CRR073314Silver flowering 30.088
CRR073315Gold flowering 12.936
CRR073316Gold flowering 22.405
CRR073317Gold flowering 32.117
CRR073318Tawny withering 14.522
CRR073319Tawny withering 25.826
CRR073320Tawny withering 31.986