Detail information of GWHGAAZE001621


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO63011.13.8723E-171hypothetical protein CISIN_1g016098mg [Citrus sinensis]
Swissprottr|Q06009|PP2A_MEDSA6E-168Serine/threonine-protein phosphatase PP2A catalytic subunit
trEMBLtr|A0A067FIH3|A0A067FIH3_CITSI1E-171Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT3G58500.11E-133protein phosphatase 2A-4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5475060554757100-
GWHAAZE00000001mRNA5475060554757100-
GWHAAZE00000001exon5475701754757100-
GWHAAZE00000001exon5475546154755586-
GWHAAZE00000001exon5475466954754756-
GWHAAZE00000001exon5475448054754519-
GWHAAZE00000001exon5475351554753581-
GWHAAZE00000001exon5475172054751911-
GWHAAZE00000001exon5475153654751625-
GWHAAZE00000001exon5475131054751417-
GWHAAZE00000001exon5475060554750733-
GWHAAZE00000001CDS5475701754757100-
GWHAAZE00000001CDS5475546154755586-
GWHAAZE00000001CDS5475466954754756-
GWHAAZE00000001CDS5475448054754519-
GWHAAZE00000001CDS5475351554753581-
GWHAAZE00000001CDS5475172054751911-
GWHAAZE00000001CDS5475153654751625-
GWHAAZE00000001CDS5475131054751417-
GWHAAZE00000001CDS5475060554750733-
Transcript Sequence

Network for GWHGAAZE001621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00149.29Metallophos52192.50E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04382PPP2C mRNA surveillance pathway map03015
MAPK signaling pathway - flymap04013
TGF-beta signaling pathwaymap04350
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728
Long-term depressionmap04730

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.655
SRR3591706second leaf18.041
SRR3591707mature leaf20.676
SRR3591708Shoot apex19.346
SRR3591709Stem23.599
SRR3591710White floral bud20.317
SRR3591711White flower20.941
SRR3591712Green floral bud36.207
SRR3591713Yellow flower14.766
SRP173429 SRR8316895Juvenile bud stage 19.705
SRR8316896Juvenile bud stage 30.617
SRR8316897Juvenile bud stage 15.556
SRR8316894Third green stage 11.261
SRR8316900Third green stage 39.501
SRR8316901Third green stage 37.367
SRR8316898Complete white stage 8.730
SRR8316899Complete white stage 35.498
SRR8316903Complete white stage 14.842
SRR8316902Silver flowering stage12.254
SRR8316904Silver flowering stage15.726
SRR8316905Silver flowering stage6.524
SRR8316906Gold flowering stage 24.116
SRR8316907Gold flowering stage 26.569
SRR8316908Gold flowering stage 22.101
SRP132670SRR6706286Control28.728
SRR6706287Light intensity 50%29.522
SRR6706288Light intensity 20%30.305
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.143
CNS0095593Slightly white alabastrum(diploid) 228.743
CNS0095594Slightly white alabastrum(diploid) 331.435
CNS0095595Whole white alabastrum(diploid) 236.768
CNS0095596Whole white alabastrum(diploid) 340.191
CNS0095597Whole white alabastrum(diploid) 436.776
CNS0095598Silvery flower (diploied) 115.229
CNS0095599Silvery flower (diploied) 216.916
CNS0095600Silvery flower (diploied) 327.473
CNS0095601Golden flower (diploid) 114.845
CNS0095602Golden flower (diploid) 223.534
CNS0095603Golden flower (diploid) 320.619
CNS0095604Slightly white alabastrum(tetraploid) 156.163
CNS0095605Slightly white alabastrum(tetraploid) 254.639
CNS0095606Slightly white alabastrum(tetraploid) 343.551
CNS0095607Whole white alabastrum(tetraploid) 170.780
CNS0095608Whole white alabastrum(tetraploid) 263.061
CNS0095609Whole white alabastrum(tetraploid) 359.712
CNS0095610Silvery flower (tetraploid) 139.569
CNS0095611Silvery flower (tetraploid) 235.245
CNS0095612Silvery flower (tetraploid) 351.372
CNS0095613Golden flower (tetraploid) 132.780
CNS0095614Golden flower (tetraploid) 237.289
CNS0095615Golden flower (tetraploid) 331.671
CRA001975CRR073297Stem 122.851
CRR073298Stem 221.199
CRR073299Stem 323.692
CRR073300Leaf 123.080
CRR073301Leaf 221.426
CRR073302Leaf 315.285
CRR073303Juvenile bud 123.274
CRR073304Juvenile bud 221.779
CRR073305Juvenile bud 320.339
CRR073306Third green 112.379
CRR073307Third green 210.194
CRR073308Third green 315.261
CRR073309Second white 113.103
CRR073310Second white 214.968
CRR073311Second white 314.888
CRR073312Silver flowering 115.046
CRR073313Silver flowering 210.729
CRR073314Silver flowering 313.038
CRR073315Gold flowering 19.530
CRR073316Gold flowering 29.945
CRR073317Gold flowering 313.119
CRR073318Tawny withering 117.623
CRR073319Tawny withering 212.150
CRR073320Tawny withering 317.051