Gene detail

Detail information of GWHGAAZE001617

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285698.1	0	PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Vitis vinifera]
Swissprot	tr\|Q9LHN8\|F6H1_ARATH	8E-174	Feruloyl CoA ortho-hydroxylase 1
trEMBL	tr\|F6GUK0\|F6GUK0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43795.1}
TAIR10	AT3G13610.1	2E-139	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	54572675	54574771	-
GWHAAZE00000001	mRNA	54572675	54574771	-
GWHAAZE00000001	exon	54572675	54573248	-
GWHAAZE00000001	exon	54574266	54574771	-
GWHAAZE00000001	CDS	54574266	54574771	-
GWHAAZE00000001	CDS	54572675	54573248	-

Transcript Sequence
>GWHTAAZE001621 ATGGCTCCAACAATAGCAACCTCACTTCCCATTTCATGGGATGTGAAGACTTTTGTACTGACCCAAGGGCATGGAGTAAAGGGACTTTCAGACATGGGCCTAAAAGCCATACCTCCCCAATACATCCAACCACAATCCGAGAGGCTCGAACTGAGTAACGTGGCTGTCGAAGAGTCCGTGCCTGTGATCGACATGTCCAAATGGCATGATCCTAACGTGGCCGACTCAATATGCAAGGCAGCAGAGAACTGGGGATTCTTTCAGATCATTAATCACGGAGTGGAAATCCAAGTGCTGGAGAATGTAAAGGCAGCAACTCACCGGTTCTTTGAGTTGCCTGCCGAGGAGAAGAAAAAGTACTCAAAGGAGAATTCACGTTCGAATAGTGTACGGTTCGGCACAAGCTTTACGCCCGATGCTGAGAAGGCTCTGGAGTGGAAAGATTACCTTAGCCTCTTCTATGTCTCCGATGACGAGGCTGCTTCTCTCTGGCCTCCTGTTTGCAAGGATCAAGCACTGGAATACAAGAAGAGCACTGAAGTTGTTATTAGGAAGCTACTAGAGGCACTAATGAAAAGATTGAATGTAACTGATATCGACGAAACAAAAGAATTGCTTCTAATGGGATCAAAGAGAATCAACCTCAACTACTACCCCACATGCCCTAACCCTGAGCTCACAGTCGGGGTGGGCCGCCATTCCGATGTATCTACACTAACTATCCTCCTCCAAGATGAGATCGGAGGGCTTTATGTCCGGAAAAGTGGCACCAAAAGTTGGATCCATGTCCCACCGGTTAGTGGATCACTTGTGATCAACATAGGAGATGCTCTTCAGATTATGAGCAACGGACGGTACAAGAGCGTTGAGCACCGTGTGCTTGCTAATGGGACCAAGAACCGCGTCTCAGTGCCGATCTTTGTGAACCCTAGACCCAATGATGTCATCGGTCCGTTGCCTGAGGTGATCGAGGACAGAGAGAAGGCTTTGTATAAGCAAGTTTTGTACTCGGATTACGTCATGCATTTCTTCAGGAAAGGCCATGATGGGAAGGACACAATTGAATATGCAAAGATATGA

Network for GWHGAAZE001617

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	60	165	1.90E-22
PF03171.21	2OG-FeII_Oxy	215	310	9.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06892	F6H	Biosynthesis of secondary metabolites	map01110
K06892	F6H	Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.464
	SRR3591706	second leaf	0.097
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.022
	SRR3591709	Stem	1.336
	SRR3591710	White floral bud	0.061
	SRR3591711	White flower	0.069
	SRR3591712	Green floral bud	0.461
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.179
	SRR8316896	Juvenile bud stage	2.438
	SRR8316897	Juvenile bud stage	1.301
	SRR8316894	Third green stage	0.689
	SRR8316900	Third green stage	2.137
	SRR8316901	Third green stage	2.585
	SRR8316898	Complete white stage	0.676
	SRR8316899	Complete white stage	2.264
	SRR8316903	Complete white stage	0.180
	SRR8316902	Silver flowering stage	0.283
	SRR8316904	Silver flowering stage	0.381
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.198
	SRR8316907	Gold flowering stage	0.169
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.342
	SRR6706287	Light intensity 50%	1.976
	SRR6706288	Light intensity 20%	1.645
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.729
	CNS0095593	Slightly white alabastrum(diploid) 2	0.710
	CNS0095594	Slightly white alabastrum(diploid) 3	2.622
	CNS0095595	Whole white alabastrum(diploid) 2	1.417
	CNS0095596	Whole white alabastrum(diploid) 3	2.356
	CNS0095597	Whole white alabastrum(diploid) 4	1.440
	CNS0095598	Silvery flower (diploied) 1	0.483
	CNS0095599	Silvery flower (diploied) 2	0.172
	CNS0095600	Silvery flower (diploied) 3	0.573
	CNS0095601	Golden flower (diploid) 1	1.296
	CNS0095602	Golden flower (diploid) 2	0.519
	CNS0095603	Golden flower (diploid) 3	0.946
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.643
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.630
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.203
	CNS0095610	Silvery flower (tetraploid) 1	0.184
	CNS0095611	Silvery flower (tetraploid) 2	0.056
	CNS0095612	Silvery flower (tetraploid) 3	0.142
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.062
	CNS0095615	Golden flower (tetraploid) 3	0.019
CRA001975	CRR073297	Stem 1	1.643
	CRR073298	Stem 2	1.992
	CRR073299	Stem 3	2.295
	CRR073300	Leaf 1	2.349
	CRR073301	Leaf 2	1.696
	CRR073302	Leaf 3	1.338
	CRR073303	Juvenile bud 1	2.074
	CRR073304	Juvenile bud 2	1.007
	CRR073305	Juvenile bud 3	1.132
	CRR073306	Third green 1	0.442
	CRR073307	Third green 2	0.614
	CRR073308	Third green 3	0.919
	CRR073309	Second white 1	0.134
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.038
	CRR073312	Silver flowering 1	0.161
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.187
	CRR073315	Gold flowering 1	0.323
	CRR073316	Gold flowering 2	0.049
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.015
	CRR073319	Tawny withering 2	0.383
	CRR073320	Tawny withering 3	0.000