Detail information of GWHGAAZE001611


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010101131.10Serine/threonine-protein phosphatase PP2A-4 catalytic subunit [Morus notabilis]
Swissprottr|Q07100|PP2A4_ARATH0Serine/threonine-protein phosphatase PP2A-4 catalytic subunit
trEMBLtr|W9REL2|W9REL2_9ROSA0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT2G42500.11E-165protein phosphatase 2A-3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5444036154449071-
GWHAAZE00000001mRNA5444036154449071-
GWHAAZE00000001exon5444906954449071-
GWHAAZE00000001exon5444875154448807-
GWHAAZE00000001exon5444677154446854-
GWHAAZE00000001exon5444526354445334-
GWHAAZE00000001exon5444442254444493-
GWHAAZE00000001exon5444421654444256-
GWHAAZE00000001exon5444324754443313-
GWHAAZE00000001exon5444144554441636-
GWHAAZE00000001exon5444125754441346-
GWHAAZE00000001exon5444103154441138-
GWHAAZE00000001exon5444036154440426-
GWHAAZE00000001CDS5444906954449071-
GWHAAZE00000001CDS5444875154448807-
GWHAAZE00000001CDS5444677154446854-
GWHAAZE00000001CDS5444526354445334-
GWHAAZE00000001CDS5444442254444493-
GWHAAZE00000001CDS5444421654444256-
GWHAAZE00000001CDS5444324754443313-
GWHAAZE00000001CDS5444144554441636-
GWHAAZE00000001CDS5444125754441346-
GWHAAZE00000001CDS5444103154441138-
GWHAAZE00000001CDS5444036154440426-
Transcript Sequence

Network for GWHGAAZE001611

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00149.29Metallophos252162.90E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04382PPP2C mRNA surveillance pathway map03015
MAPK signaling pathway - flymap04013
TGF-beta signaling pathwaymap04350
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728
Long-term depressionmap04730

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.148
SRR3591706second leaf36.590
SRR3591707mature leaf35.739
SRR3591708Shoot apex39.010
SRR3591709Stem48.375
SRR3591710White floral bud41.294
SRR3591711White flower30.413
SRR3591712Green floral bud60.483
SRR3591713Yellow flower22.593
SRP173429 SRR8316895Juvenile bud stage 32.430
SRR8316896Juvenile bud stage 48.292
SRR8316897Juvenile bud stage 13.816
SRR8316894Third green stage 22.187
SRR8316900Third green stage 67.217
SRR8316901Third green stage 65.725
SRR8316898Complete white stage 28.400
SRR8316899Complete white stage 67.535
SRR8316903Complete white stage 39.558
SRR8316902Silver flowering stage21.578
SRR8316904Silver flowering stage29.114
SRR8316905Silver flowering stage12.414
SRR8316906Gold flowering stage 42.777
SRR8316907Gold flowering stage 42.239
SRR8316908Gold flowering stage 23.736
SRP132670SRR6706286Control27.718
SRR6706287Light intensity 50%31.743
SRR6706288Light intensity 20%35.313
CNP0000432CNS0095592Slightly white alabastrum(diploid) 141.805
CNS0095593Slightly white alabastrum(diploid) 236.309
CNS0095594Slightly white alabastrum(diploid) 342.237
CNS0095595Whole white alabastrum(diploid) 246.765
CNS0095596Whole white alabastrum(diploid) 357.441
CNS0095597Whole white alabastrum(diploid) 455.824
CNS0095598Silvery flower (diploied) 127.282
CNS0095599Silvery flower (diploied) 233.460
CNS0095600Silvery flower (diploied) 357.819
CNS0095601Golden flower (diploid) 124.502
CNS0095602Golden flower (diploid) 243.028
CNS0095603Golden flower (diploid) 346.877
CNS0095604Slightly white alabastrum(tetraploid) 141.258
CNS0095605Slightly white alabastrum(tetraploid) 241.526
CNS0095606Slightly white alabastrum(tetraploid) 337.347
CNS0095607Whole white alabastrum(tetraploid) 143.943
CNS0095608Whole white alabastrum(tetraploid) 248.582
CNS0095609Whole white alabastrum(tetraploid) 350.128
CNS0095610Silvery flower (tetraploid) 137.210
CNS0095611Silvery flower (tetraploid) 240.257
CNS0095612Silvery flower (tetraploid) 352.395
CNS0095613Golden flower (tetraploid) 125.174
CNS0095614Golden flower (tetraploid) 235.322
CNS0095615Golden flower (tetraploid) 327.131
CRA001975CRR073297Stem 128.157
CRR073298Stem 232.032
CRR073299Stem 335.066
CRR073300Leaf 141.674
CRR073301Leaf 233.604
CRR073302Leaf 337.726
CRR073303Juvenile bud 132.914
CRR073304Juvenile bud 233.679
CRR073305Juvenile bud 333.431
CRR073306Third green 125.146
CRR073307Third green 217.178
CRR073308Third green 324.045
CRR073309Second white 123.900
CRR073310Second white 229.905
CRR073311Second white 325.168
CRR073312Silver flowering 128.025
CRR073313Silver flowering 226.147
CRR073314Silver flowering 325.605
CRR073315Gold flowering 121.673
CRR073316Gold flowering 226.833
CRR073317Gold flowering 324.163
CRR073318Tawny withering 129.143
CRR073319Tawny withering 227.816
CRR073320Tawny withering 336.281