Gene detail

Detail information of GWHGAAZE001606

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285698.1	0	PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Vitis vinifera]
Swissprot	tr\|Q9LHN8\|F6H1_ARATH	2E-173	Feruloyl CoA ortho-hydroxylase 1
trEMBL	tr\|F6GUK0\|F6GUK0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43795.1}
TAIR10	AT3G13610.1	3E-139	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	54245613	54247701	-
GWHAAZE00000001	mRNA	54245613	54247701	-
GWHAAZE00000001	exon	54245613	54246186	-
GWHAAZE00000001	exon	54247196	54247701	-
GWHAAZE00000001	CDS	54247196	54247701	-
GWHAAZE00000001	CDS	54245613	54246186	-

Transcript Sequence
>GWHTAAZE001610 ATGGCTCCAACAATAGCAACCTCACTTCCCATTTCATGGGATGTGAAGACTTTTGTACTGACCCAAGGGCATGGAGTAAAGGGACTTTCAGACATGGGCCTAAAAGCCATACCTCCCCAATACATCCAACCACAATCCGAGAGGCTCGAACCGAGCAACGTGGCTGTCGAAGAGTCTGTGCCTGTGATCGACATGTCCAAATGGCATGATCCTAACGTGGCCAACTCGATATGCGAGGCGGCAGAGAAATGGGGATTCTTTCAGATCATTAATCACGGAGTGGAAATCCAAGTGCTGGAGAATGTAAAGGAAGCAACTCACCGGTTCTTTGAGTTGCCTGCCGAGGAGAAGAAAAAGTACTCAAAGGAGAATTCACGTTCGAATAGTGTACGGTTCGGCACGAGCTTTACGCCCGATGCTGAGAAGGCTCTGGAGTGGAAAGATTACCTTAGCCTCTTCTATGTCTCCGATGACGAGGCTGCTTGTCTCTGGCCTCCTGTTTGCAAGGATCACGCACTGGAATACAAGAAGAGCACTGAAGTTGTTATTAGGAAGCTACTAGAGGCACTAATGAAAAGATTGAATGTAACTGATATCAACGAAACAAAAGAATTGCTTCTAATGGGATCAAAGAGAATCAACCTCAACTACTACCCCACATGCCCTAACCCTGAGCTCACAGTCGGGGTGGGCCGCCATTCTGATGTATCTACACTAACTATCCTCCTGCAAGATGAGATCGGAGGGCTTTATGTCCGGAAAAGTGGCACCAAAAGTTGGATCCATGTCCCACCGGTTAGTGGATCACTTGTGATCAACATAGGAGATGCTCTTCAGATTATGAGCAACGGACGGTACAAGAGCGTTGAGCACCGTGTGCTTGCTAATGGGACCAAGAACCGCGTCTCAGTGCCGATCTTTGTGAACCCTAGACCCAATGATGTCATCGGTCCGTTGCCTGAGGTGATCGAGGACGGAGAGAAGGCTTTGTATAAGCAAGTTTTGTACTCGGATTACGTCATGCATTTCTTCAGGAAAGGCCATGATGGGAAGGACACAATTGAATATGCAAAGATATGA

Network for GWHGAAZE001606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	60	155	1.30E-22
PF03171.21	2OG-FeII_Oxy	215	310	9.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06892	F6H	Biosynthesis of secondary metabolites	map01110
K06892	F6H	Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.104
	SRR3591706	second leaf	0.143
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.067
	SRR3591709	Stem	0.414
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.261
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.153
	SRR8316896	Juvenile bud stage	2.923
	SRR8316897	Juvenile bud stage	0.602
	SRR8316894	Third green stage	1.222
	SRR8316900	Third green stage	2.856
	SRR8316901	Third green stage	2.072
	SRR8316898	Complete white stage	0.119
	SRR8316899	Complete white stage	1.334
	SRR8316903	Complete white stage	0.350
	SRR8316902	Silver flowering stage	0.076
	SRR8316904	Silver flowering stage	0.702
	SRR8316905	Silver flowering stage	0.175
	SRR8316906	Gold flowering stage	0.023
	SRR8316907	Gold flowering stage	0.269
	SRR8316908	Gold flowering stage	0.068
SRP132670	SRR6706286	Control	1.733
	SRR6706287	Light intensity 50%	1.667
	SRR6706288	Light intensity 20%	1.802
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.001
	CNS0095593	Slightly white alabastrum(diploid) 2	1.978
	CNS0095594	Slightly white alabastrum(diploid) 3	1.085
	CNS0095595	Whole white alabastrum(diploid) 2	0.701
	CNS0095596	Whole white alabastrum(diploid) 3	1.068
	CNS0095597	Whole white alabastrum(diploid) 4	0.816
	CNS0095598	Silvery flower (diploied) 1	0.402
	CNS0095599	Silvery flower (diploied) 2	0.685
	CNS0095600	Silvery flower (diploied) 3	0.250
	CNS0095601	Golden flower (diploid) 1	1.081
	CNS0095602	Golden flower (diploid) 2	0.565
	CNS0095603	Golden flower (diploid) 3	0.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.786
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.964
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.970
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.602
	CNS0095610	Silvery flower (tetraploid) 1	1.983
	CNS0095611	Silvery flower (tetraploid) 2	0.295
	CNS0095612	Silvery flower (tetraploid) 3	0.695
	CNS0095613	Golden flower (tetraploid) 1	0.202
	CNS0095614	Golden flower (tetraploid) 2	0.418
	CNS0095615	Golden flower (tetraploid) 3	0.109
CRA001975	CRR073297	Stem 1	1.623
	CRR073298	Stem 2	2.487
	CRR073299	Stem 3	2.160
	CRR073300	Leaf 1	2.362
	CRR073301	Leaf 2	1.078
	CRR073302	Leaf 3	1.964
	CRR073303	Juvenile bud 1	1.297
	CRR073304	Juvenile bud 2	0.531
	CRR073305	Juvenile bud 3	0.870
	CRR073306	Third green 1	0.362
	CRR073307	Third green 2	0.771
	CRR073308	Third green 3	2.135
	CRR073309	Second white 1	0.072
	CRR073310	Second white 2	0.042
	CRR073311	Second white 3	0.070
	CRR073312	Silver flowering 1	0.051
	CRR073313	Silver flowering 2	0.185
	CRR073314	Silver flowering 3	0.263
	CRR073315	Gold flowering 1	0.071
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.015
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000