Gene detail

Detail information of GWHGAAZE001604

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP16795.1	1.1554E-103	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LHP2\|SL30A_ARATH	1E-76	Serine/arginine-rich SC35-like splicing factor SCL30A
trEMBL	tr\|A0A068V7Q4\|A0A068V7Q4_COFCA	4E-104	Coffea canephora DH200=94 genomic scaffold, scaffold_136 {ECO:0000313\|EMBL:CDP16795.1}
TAIR10	AT3G13570.1	8E-38	SC35-like splicing factor 30A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	54214765	54221448	+
GWHAAZE00000001	mRNA	54214765	54221448	+
GWHAAZE00000001	exon	54214765	54214907	+
GWHAAZE00000001	exon	54216750	54216827	+
GWHAAZE00000001	exon	54219156	54219239	+
GWHAAZE00000001	exon	54219484	54219645	+
GWHAAZE00000001	exon	54220030	54220161	+
GWHAAZE00000001	exon	54221130	54221448	+
GWHAAZE00000001	CDS	54214765	54214907	+
GWHAAZE00000001	CDS	54216750	54216827	+
GWHAAZE00000001	CDS	54219156	54219239	+
GWHAAZE00000001	CDS	54219484	54219645	+
GWHAAZE00000001	CDS	54220030	54220161	+
GWHAAZE00000001	CDS	54221130	54221448	+

Transcript Sequence
>GWHTAAZE001608 ATGAGGGGAAGGAGTTACACTCCGTCACCACCAAGGGGTTATGGTAGAAGAGGAAGGAGCCCTAGCCCTAGGGGTCGCTATGGCGGTCGCGATAGAGATCTTCCAACTAGTCTTCTAGTTCGTAACCTTCGTCATGATTGTCGGCCAGAAGACCTTCGAAGGCCCTTTGGACAATTTGGTCCTCTTAAAGACATCTATTTGCCAAGAGATTATTATAGTGGATTGGAAGGATTTGGGTTTGAATACATTGTGAAGATTCAAGTCTTGAAGAATTTCAAGTCAATATTAATACTGACACTTGCAAGAGAGCCAAGGGGATTTGGTTTTGTCCAGTTTGTAGATCCTGCTGATGCTGCTGAAGCTAAATATCAGATGGATGGTCAGATTCTTCTAGGCCGGCAGCTTACAGTTGTGTTTGCTGAAGAGAACAGGAAGAAGCCAACTGATATGAGAGCAAGGGAACGAAGGGGCCGGTTTTCTGATCGAAGGCGTACACCCCCTCGTTATTCTCGCTCGCCTCGATACTCTCGATCTCCACCTCCTCGCTACTCTCGATCCCGTGACTACTCGCCTCCTCCTAAGAGAAGGCAATACTCGAGGTCTGTTTCACCTCAAGAGAAGAGGTCTCTGTCACGCCACAGCCGTGAGAGGTCGTACTCGCGTTCCCCAGTACGGGACCGTTCACCACCACCCTATAAGGGCGGGTCAAGGAGCCGGAGCCCCAGTCGAAGTCCTGTAGGGGTGGAGAGGTCTCCTCCACCCTATAATGGGTCAAGGAGCCGCAGCAGGAGCCCCGCCGTTAGGGTTAGGGACCACCGTTCTCCTATCAGAGATCTGAGCAGGAGCCCAAGTAGGAGCAGGAGTCCACTGGAATACTCTAGGGGACCAGGCAGGGATGATGGCTCTCCTAGTCAGTAG

Network for GWHGAAZE001604

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	38	80	4.40E-06
PF00076.23	RRM_1	92	135	2.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12900	FUSIP1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.077
	SRR3591706	second leaf	27.032
	SRR3591707	mature leaf	24.674
	SRR3591708	Shoot apex	50.322
	SRR3591709	Stem	38.644
	SRR3591710	White floral bud	40.702
	SRR3591711	White flower	32.286
	SRR3591712	Green floral bud	37.888
	SRR3591713	Yellow flower	36.111
SRP173429	SRR8316895	Juvenile bud stage	33.698
	SRR8316896	Juvenile bud stage	47.022
	SRR8316897	Juvenile bud stage	20.911
	SRR8316894	Third green stage	15.099
	SRR8316900	Third green stage	48.129
	SRR8316901	Third green stage	48.761
	SRR8316898	Complete white stage	16.096
	SRR8316899	Complete white stage	62.406
	SRR8316903	Complete white stage	30.659
	SRR8316902	Silver flowering stage	17.381
	SRR8316904	Silver flowering stage	19.232
	SRR8316905	Silver flowering stage	10.663
	SRR8316906	Gold flowering stage	35.947
	SRR8316907	Gold flowering stage	32.194
	SRR8316908	Gold flowering stage	32.671
SRP132670	SRR6706286	Control	31.636
	SRR6706287	Light intensity 50%	35.511
	SRR6706288	Light intensity 20%	37.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.567
	CNS0095593	Slightly white alabastrum(diploid) 2	65.039
	CNS0095594	Slightly white alabastrum(diploid) 3	53.545
	CNS0095595	Whole white alabastrum(diploid) 2	39.683
	CNS0095596	Whole white alabastrum(diploid) 3	41.213
	CNS0095597	Whole white alabastrum(diploid) 4	37.530
	CNS0095598	Silvery flower (diploied) 1	53.650
	CNS0095599	Silvery flower (diploied) 2	44.335
	CNS0095600	Silvery flower (diploied) 3	37.763
	CNS0095601	Golden flower (diploid) 1	47.700
	CNS0095602	Golden flower (diploid) 2	39.234
	CNS0095603	Golden flower (diploid) 3	41.936
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.242
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.756
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.712
	CNS0095610	Silvery flower (tetraploid) 1	45.904
	CNS0095611	Silvery flower (tetraploid) 2	35.904
	CNS0095612	Silvery flower (tetraploid) 3	50.119
	CNS0095613	Golden flower (tetraploid) 1	34.639
	CNS0095614	Golden flower (tetraploid) 2	40.207
	CNS0095615	Golden flower (tetraploid) 3	33.327
CRA001975	CRR073297	Stem 1	44.897
	CRR073298	Stem 2	43.698
	CRR073299	Stem 3	45.436
	CRR073300	Leaf 1	49.581
	CRR073301	Leaf 2	51.397
	CRR073302	Leaf 3	34.769
	CRR073303	Juvenile bud 1	35.741
	CRR073304	Juvenile bud 2	26.011
	CRR073305	Juvenile bud 3	38.774
	CRR073306	Third green 1	14.788
	CRR073307	Third green 2	14.863
	CRR073308	Third green 3	16.977
	CRR073309	Second white 1	16.625
	CRR073310	Second white 2	21.174
	CRR073311	Second white 3	11.233
	CRR073312	Silver flowering 1	14.042
	CRR073313	Silver flowering 2	19.509
	CRR073314	Silver flowering 3	11.647
	CRR073315	Gold flowering 1	19.737
	CRR073316	Gold flowering 2	23.174
	CRR073317	Gold flowering 3	17.849
	CRR073318	Tawny withering 1	45.096
	CRR073319	Tawny withering 2	44.206
	CRR073320	Tawny withering 3	41.260