Gene detail

Detail information of GWHGAAZE001591

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010271350.1	8.09335E-73	PREDICTED: calmodulin [Nelumbo nucifera]
Swissprot	tr\|P27161\|CALM_SOLLC	5E-75	Calmodulin
trEMBL	tr\|Q711J0\|Q711J0_SOLCO	4E-73	Putative calmodulin {ECO:0000313\|EMBL:CAC84563.1}
TAIR10	AT5G37780.1	1E-57	calmodulin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	53707617	53708066	+
GWHAAZE00000001	mRNA	53707617	53708066	+
GWHAAZE00000001	exon	53707617	53708066	+
GWHAAZE00000001	CDS	53707617	53708066	+

Transcript Sequence
>GWHTAAZE001595 ATGGCAGAGCAGCTAACGGAGGAACAAATTTCCGAGTTCAAGGAATCCTTTAAGCTTTTCGACCAGAATGGCGATGGTGTTATAAGTAGCAACGAATTGGGTTCGGTGATGAAATCTTTGGGGCAGAATCCAACAGAAGATGAGGTGCAATTTATGATCAAGGAAGTTGATGCGGATCACAGTGGTACCATCAACTTCACCGAGTTCCTCAACTTGATGGCCAAAAAAATGAAGGATGATGGTGTAGTGAAGGAGATCAAAGAGGCATTCAAGGTGTTTGATATAGATAAAAGTGGCTTTATATCTGCTGCAGAGATAAAGCAAGTAATGAGTAACTTAGGGCAGAAGTTGAGTGACAAAAATGTGAATAGAATGATTAGAGAAGCAGACATCGACGGCGATGGTCAGATCAATTACGAGGAGTTTGTTAAAATGATGTTTTCCAAGTGA

Network for GWHGAAZE001591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	12	73	3.80E-15
PF13499.7	EF-hand_7	85	146	4.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02183	CALM	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway - plant	map04016
		Apelin signaling pathway	map04371
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		GnRH signaling pathway	map04912
		Estrogen signaling pathway	map04915
		Oxytocin signaling pathway	map04921
		Melanogenesis	map04916
		Renin secretion	map04924
		Aldosterone synthesis and secretion	map04925
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Salivary secretion	map04970
		Gastric acid secretion	map04971
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Neurotrophin signaling pathway	map04722
		Phototransduction	map04744
		Phototransduction - fly	map04745
		Olfactory transduction	map04740
		Inflammatory mediator regulation of TRP channels	map04750
		Circadian entrainment	map04713
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.478
	SRR3591706	second leaf	18.232
	SRR3591707	mature leaf	22.110
	SRR3591708	Shoot apex	35.373
	SRR3591709	Stem	37.426
	SRR3591710	White floral bud	27.757
	SRR3591711	White flower	21.050
	SRR3591712	Green floral bud	16.062
	SRR3591713	Yellow flower	12.943
SRP173429	SRR8316895	Juvenile bud stage	46.355
	SRR8316896	Juvenile bud stage	54.121
	SRR8316897	Juvenile bud stage	51.718
	SRR8316894	Third green stage	13.456
	SRR8316900	Third green stage	38.985
	SRR8316901	Third green stage	43.711
	SRR8316898	Complete white stage	16.471
	SRR8316899	Complete white stage	113.854
	SRR8316903	Complete white stage	25.473
	SRR8316902	Silver flowering stage	8.307
	SRR8316904	Silver flowering stage	11.268
	SRR8316905	Silver flowering stage	7.673
	SRR8316906	Gold flowering stage	9.390
	SRR8316907	Gold flowering stage	8.352
	SRR8316908	Gold flowering stage	7.759
SRP132670	SRR6706286	Control	17.442
	SRR6706287	Light intensity 50%	29.236
	SRR6706288	Light intensity 20%	26.293
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	104.029
	CNS0095593	Slightly white alabastrum(diploid) 2	162.008
	CNS0095594	Slightly white alabastrum(diploid) 3	139.168
	CNS0095595	Whole white alabastrum(diploid) 2	108.189
	CNS0095596	Whole white alabastrum(diploid) 3	42.279
	CNS0095597	Whole white alabastrum(diploid) 4	95.611
	CNS0095598	Silvery flower (diploied) 1	132.898
	CNS0095599	Silvery flower (diploied) 2	111.430
	CNS0095600	Silvery flower (diploied) 3	46.093
	CNS0095601	Golden flower (diploid) 1	111.565
	CNS0095602	Golden flower (diploid) 2	54.945
	CNS0095603	Golden flower (diploid) 3	54.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.655
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.828
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.223
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.753
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.232
	CNS0095610	Silvery flower (tetraploid) 1	39.773
	CNS0095611	Silvery flower (tetraploid) 2	26.397
	CNS0095612	Silvery flower (tetraploid) 3	13.913
	CNS0095613	Golden flower (tetraploid) 1	24.631
	CNS0095614	Golden flower (tetraploid) 2	25.106
	CNS0095615	Golden flower (tetraploid) 3	17.846
CRA001975	CRR073297	Stem 1	43.851
	CRR073298	Stem 2	32.358
	CRR073299	Stem 3	15.663
	CRR073300	Leaf 1	48.502
	CRR073301	Leaf 2	88.238
	CRR073302	Leaf 3	23.184
	CRR073303	Juvenile bud 1	43.067
	CRR073304	Juvenile bud 2	22.647
	CRR073305	Juvenile bud 3	54.374
	CRR073306	Third green 1	18.663
	CRR073307	Third green 2	14.576
	CRR073308	Third green 3	9.238
	CRR073309	Second white 1	120.778
	CRR073310	Second white 2	49.914
	CRR073311	Second white 3	48.631
	CRR073312	Silver flowering 1	80.313
	CRR073313	Silver flowering 2	66.431
	CRR073314	Silver flowering 3	62.248
	CRR073315	Gold flowering 1	20.491
	CRR073316	Gold flowering 2	19.567
	CRR073317	Gold flowering 3	12.278
	CRR073318	Tawny withering 1	29.394
	CRR073319	Tawny withering 2	40.102
	CRR073320	Tawny withering 3	21.023