Gene detail

Detail information of GWHGAAZE001476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004228679.1	0	PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Solanum lycopersicum]
Swissprot	tr\|Q9M2P4\|SINA2_ARATH	4E-168	E3 ubiquitin-protein ligase SINAT2
trEMBL	tr\|K4ASI5\|K4ASI5_SOLLC	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}
TAIR10	AT3G58040.1	6E-134	seven in absentia of Arabidopsis 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	46183449	46188525	-
GWHAAZE00000001	mRNA	46183449	46188525	-
GWHAAZE00000001	exon	46188301	46188525	-
GWHAAZE00000001	exon	46186460	46186846	-
GWHAAZE00000001	exon	46183449	46183772	-
GWHAAZE00000001	CDS	46188301	46188525	-
GWHAAZE00000001	CDS	46186460	46186846	-
GWHAAZE00000001	CDS	46183449	46183772	-

Transcript Sequence
>GWHTAAZE001480 ATGGCTCTGGGAGGCGGTGGTGTATACCAGGATGTCATCGAGTCAAATAGTGCTGCATTTTCTGACTATGGGATCATAGCACCTGAAAGTATGGAATTTCGAAGTTCCATCATCCGGAAATCAGCTGCTGTTGGTGCGAAGATGGGAATGGCTTCAAATAGTGCAGTCCACGAGCTACTTGAGTGCCCTGTCTGCATGAACATAATGTATCCTCCAATTCATCAGTGTCCAAATGGCCACACCCTATGCTTGAACTGTAAGGCCAAAGTACACAACTGTTGCCCGATTTGCCGGCAAGAACTTGGAAATATAAGGTGTTTGGCCTTGGAGAAAATTGCGGAATCACTAGAACTGCCATGCAAATTTCAGTATTTGGGTTGTCAAGATATATTCACCTACCACAGCAGGCTCAGGCACGAGCAGAATTGCAGGTATCGTGCTTATAATTGCCCGTATGCAGGAGCTGAATGCACCGTTACTGGTGGTATCCAATTCCTTGTTGAGCATCTCAAGGGCGATCACAATGTTGATATGCATGATGGCTGTACTTTTAACCACCGGTATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGTTAACTGTTTTTAACTGTTTTGGGCACCAGTTCTGCTTGCACTTTGAGGCGTTTCATCTAGGAATGGCGCCGGTATACATGGCGTTTTTGCGGTTTATGGGGGATGAACACGACGCCAAGAGGTTCAGTTACAGCTTAGAAGTGGGTGGCAATGGCCGTAAATTGACCTGGCAAGGAGTCCCGAGGAGCATCCGCGATAGTCACAAGACGGTCCGTGACAGTCTAGACGGTCTCATTATTCAGCGCAATATGGCTCTCTTTTTCTCAGGTGGGGATAGGCAAGAGCTCAAGCTGAAGGTGGCCGGTCGTATATGGAAAGAGCAGTTGTAA

Network for GWHGAAZE001476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03145.17	Sina	104	302	1.10E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04506	SIAH1	Ubiquitin mediated proteolysis	map04120
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0007275	biological_process	multicellular organism development
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.916
	SRR3591706	second leaf	16.207
	SRR3591707	mature leaf	30.645
	SRR3591708	Shoot apex	19.032
	SRR3591709	Stem	27.201
	SRR3591710	White floral bud	28.528
	SRR3591711	White flower	53.425
	SRR3591712	Green floral bud	23.182
	SRR3591713	Yellow flower	85.319
SRP173429	SRR8316895	Juvenile bud stage	20.389
	SRR8316896	Juvenile bud stage	20.162
	SRR8316897	Juvenile bud stage	12.785
	SRR8316894	Third green stage	8.899
	SRR8316900	Third green stage	22.630
	SRR8316901	Third green stage	24.937
	SRR8316898	Complete white stage	17.379
	SRR8316899	Complete white stage	47.017
	SRR8316903	Complete white stage	22.647
	SRR8316902	Silver flowering stage	20.963
	SRR8316904	Silver flowering stage	24.885
	SRR8316905	Silver flowering stage	13.310
	SRR8316906	Gold flowering stage	63.452
	SRR8316907	Gold flowering stage	50.672
	SRR8316908	Gold flowering stage	57.786
SRP132670	SRR6706286	Control	30.882
	SRR6706287	Light intensity 50%	28.059
	SRR6706288	Light intensity 20%	28.885
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.996
	CNS0095593	Slightly white alabastrum(diploid) 2	25.694
	CNS0095594	Slightly white alabastrum(diploid) 3	17.286
	CNS0095595	Whole white alabastrum(diploid) 2	19.469
	CNS0095596	Whole white alabastrum(diploid) 3	19.242
	CNS0095597	Whole white alabastrum(diploid) 4	18.932
	CNS0095598	Silvery flower (diploied) 1	50.443
	CNS0095599	Silvery flower (diploied) 2	47.330
	CNS0095600	Silvery flower (diploied) 3	85.585
	CNS0095601	Golden flower (diploid) 1	61.848
	CNS0095602	Golden flower (diploid) 2	116.006
	CNS0095603	Golden flower (diploid) 3	103.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.227
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.300
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.664
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.842
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.605
	CNS0095610	Silvery flower (tetraploid) 1	75.195
	CNS0095611	Silvery flower (tetraploid) 2	90.421
	CNS0095612	Silvery flower (tetraploid) 3	57.697
	CNS0095613	Golden flower (tetraploid) 1	73.972
	CNS0095614	Golden flower (tetraploid) 2	91.937
	CNS0095615	Golden flower (tetraploid) 3	122.962
CRA001975	CRR073297	Stem 1	25.655
	CRR073298	Stem 2	25.697
	CRR073299	Stem 3	28.312
	CRR073300	Leaf 1	25.574
	CRR073301	Leaf 2	30.886
	CRR073302	Leaf 3	27.784
	CRR073303	Juvenile bud 1	32.732
	CRR073304	Juvenile bud 2	24.687
	CRR073305	Juvenile bud 3	26.789
	CRR073306	Third green 1	11.527
	CRR073307	Third green 2	10.829
	CRR073308	Third green 3	11.072
	CRR073309	Second white 1	28.410
	CRR073310	Second white 2	21.512
	CRR073311	Second white 3	23.951
	CRR073312	Silver flowering 1	24.648
	CRR073313	Silver flowering 2	22.603
	CRR073314	Silver flowering 3	23.076
	CRR073315	Gold flowering 1	26.421
	CRR073316	Gold flowering 2	28.347
	CRR073317	Gold flowering 3	25.886
	CRR073318	Tawny withering 1	32.009
	CRR073319	Tawny withering 2	32.113
	CRR073320	Tawny withering 3	23.660