Gene detail

Detail information of GWHGAAZE001466

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010087387.1	4.0047E-108	Zinc finger CCCH domain-containing protein 14 [Morus notabilis]
Swissprot	tr\|Q7F8R0\|C3H14_ORYSJ	2E-79	Zinc finger CCCH domain-containing protein 14
trEMBL	tr\|W9QK76\|W9QK76_9ROSA	1E-108	Zinc finger CCCH domain-containing protein 14 {ECO:0000313\|EMBL:EXB28997.1}
TAIR10	AT5G06770.1	2E-43	KH domain-containing protein / zinc finger (CCCH type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	44205853	44206563	+
GWHAAZE00000001	mRNA	44205853	44206563	+
GWHAAZE00000001	exon	44205853	44206147	+
GWHAAZE00000001	exon	44206178	44206563	+
GWHAAZE00000001	CDS	44205853	44206147	+
GWHAAZE00000001	CDS	44206178	44206563	+

Transcript Sequence
>GWHTAAZE001470 ATGACAGGCACTAACCCGGCCCTTCCTCCAGCTGCCGCAAGAAACCCCATAGCTCCACCACCATCCTTCCCCGATGGTTCCTCCCTTCCGGCAGTCAAAACCCGTCTATGCAACAAATACAACACTGCCGAAGGCTGCAAGTTTGGTGATAAATGCCATTTCGCCCACGGTGAATGGGAGCTTGGCAAGCCCACATCATTCCCAACCCACGAAGACCCTCGTGCTCACATGGGCCCACCCCCACCAGGCCGGTTTGGCGGGCGGATGGAGCCGCCAGCCCCACAAAGCCACCACGCTACGGCTAAGATCAGTGTTGATGCCTCGCTTGCGGGAGCCATAATCGGCAAAAGTGGGGTCAACTCAAAGCAGATATGTCGATTGACCGGAGCAAAGCTATCGATTAGAGACCACGAGTCAGACCCAAACCTAAGGAACATTGAACTCGAGGGTACATTTGACCAGATCAAGCAAGCGAGTCAAATGGTTCGGGAACTTATTGTGAACATCAGTTCGGCCTCTGGGCCTCCACCGCCGCAGAAGAACTCAGCTATGGGAGGTCCGGGTCCCGCCAACAAAGTGAAAACAAAGCTTTGTGAGAACTTTGCAAAAGGCTCATGTACGTTTGGGGAAAGGTGCCACTTTGCGCACGGAGCCGAAGAGTTGCGCAGGTCAGGGGTGTGA

Network for GWHGAAZE001466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	33	58	9.40E-07
PF00013.30	KH_1	100	164	1.10E-11
PF00642.25	zf-CCCH	194	217	9.00E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.437
	SRR3591706	second leaf	42.808
	SRR3591707	mature leaf	38.819
	SRR3591708	Shoot apex	48.422
	SRR3591709	Stem	31.807
	SRR3591710	White floral bud	31.057
	SRR3591711	White flower	37.564
	SRR3591712	Green floral bud	46.107
	SRR3591713	Yellow flower	20.081
SRP173429	SRR8316895	Juvenile bud stage	34.398
	SRR8316896	Juvenile bud stage	38.952
	SRR8316897	Juvenile bud stage	18.355
	SRR8316894	Third green stage	13.258
	SRR8316900	Third green stage	37.562
	SRR8316901	Third green stage	42.718
	SRR8316898	Complete white stage	10.455
	SRR8316899	Complete white stage	49.502
	SRR8316903	Complete white stage	21.560
	SRR8316902	Silver flowering stage	12.910
	SRR8316904	Silver flowering stage	10.532
	SRR8316905	Silver flowering stage	3.906
	SRR8316906	Gold flowering stage	14.419
	SRR8316907	Gold flowering stage	19.111
	SRR8316908	Gold flowering stage	18.045
SRP132670	SRR6706286	Control	39.011
	SRR6706287	Light intensity 50%	37.515
	SRR6706288	Light intensity 20%	39.295
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.563
	CNS0095593	Slightly white alabastrum(diploid) 2	44.315
	CNS0095594	Slightly white alabastrum(diploid) 3	33.845
	CNS0095595	Whole white alabastrum(diploid) 2	29.770
	CNS0095596	Whole white alabastrum(diploid) 3	32.818
	CNS0095597	Whole white alabastrum(diploid) 4	27.701
	CNS0095598	Silvery flower (diploied) 1	38.114
	CNS0095599	Silvery flower (diploied) 2	36.022
	CNS0095600	Silvery flower (diploied) 3	22.429
	CNS0095601	Golden flower (diploid) 1	29.082
	CNS0095602	Golden flower (diploid) 2	26.955
	CNS0095603	Golden flower (diploid) 3	25.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.203
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.524
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.148
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.562
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.396
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.077
	CNS0095610	Silvery flower (tetraploid) 1	29.478
	CNS0095611	Silvery flower (tetraploid) 2	25.110
	CNS0095612	Silvery flower (tetraploid) 3	28.243
	CNS0095613	Golden flower (tetraploid) 1	17.862
	CNS0095614	Golden flower (tetraploid) 2	24.398
	CNS0095615	Golden flower (tetraploid) 3	18.800
CRA001975	CRR073297	Stem 1	36.914
	CRR073298	Stem 2	35.248
	CRR073299	Stem 3	45.797
	CRR073300	Leaf 1	34.047
	CRR073301	Leaf 2	38.018
	CRR073302	Leaf 3	34.225
	CRR073303	Juvenile bud 1	37.084
	CRR073304	Juvenile bud 2	22.375
	CRR073305	Juvenile bud 3	51.120
	CRR073306	Third green 1	20.946
	CRR073307	Third green 2	23.802
	CRR073308	Third green 3	19.931
	CRR073309	Second white 1	21.763
	CRR073310	Second white 2	12.649
	CRR073311	Second white 3	11.976
	CRR073312	Silver flowering 1	18.126
	CRR073313	Silver flowering 2	17.812
	CRR073314	Silver flowering 3	15.493
	CRR073315	Gold flowering 1	20.750
	CRR073316	Gold flowering 2	28.205
	CRR073317	Gold flowering 3	36.645
	CRR073318	Tawny withering 1	52.520
	CRR073319	Tawny withering 2	40.909
	CRR073320	Tawny withering 3	61.154