Detail information of GWHGAAZE001444


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283248.28.82362E-92PREDICTED: octanoyltransferase isoform X3 [Vitis vinifera]
Swissprottr|Q9SXP7|LIPB_ARATH1E-90Octanoyltransferase
trEMBLtr|F6GUD8|F6GUD8_VITVI2E-91Putative uncharacterized protein {ECO:0000313|EMBL:CCB43759.1}
TAIR10AT1G04640.22E-72lipoyltransferase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene4330198843302500-
GWHAAZE00000001mRNA4330198843302500-
GWHAAZE00000001exon4330198843302500-
GWHAAZE00000001CDS4330198843302500-
Transcript Sequence

Network for GWHGAAZE001444

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03099.20BPL_LplA_LipB491541.00E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K23735LIPT2, LIP2 Metabolic pathways map01100
Lipoic acid metabolismmap00785

Gene Ontology

GO term OntologyName
GO:0009249biological_processprotein lipoylation
GO:0006464biological_processcellular protein modification process
GO:0033819molecular_functionlipoyl(octanoyl) transferase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE001444.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3012345678910111213Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.518
SRR3591706second leaf1.380
SRR3591707mature leaf2.153
SRR3591708Shoot apex4.130
SRR3591709Stem4.617
SRR3591710White floral bud1.714
SRR3591711White flower1.639
SRR3591712Green floral bud1.118
SRR3591713Yellow flower1.860
SRP173429 SRR8316895Juvenile bud stage 3.742
SRR8316896Juvenile bud stage 5.510
SRR8316897Juvenile bud stage 1.157
SRR8316894Third green stage 2.269
SRR8316900Third green stage 5.280
SRR8316901Third green stage 6.362
SRR8316898Complete white stage 3.105
SRR8316899Complete white stage 8.364
SRR8316903Complete white stage 4.080
SRR8316902Silver flowering stage2.463
SRR8316904Silver flowering stage3.281
SRR8316905Silver flowering stage2.135
SRR8316906Gold flowering stage 8.159
SRR8316907Gold flowering stage 7.827
SRR8316908Gold flowering stage 8.071
SRP132670SRR6706286Control7.414
SRR6706287Light intensity 50%7.378
SRR6706288Light intensity 20%7.702
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.854
CNS0095593Slightly white alabastrum(diploid) 25.808
CNS0095594Slightly white alabastrum(diploid) 34.872
CNS0095595Whole white alabastrum(diploid) 25.141
CNS0095596Whole white alabastrum(diploid) 35.363
CNS0095597Whole white alabastrum(diploid) 47.267
CNS0095598Silvery flower (diploied) 14.226
CNS0095599Silvery flower (diploied) 22.255
CNS0095600Silvery flower (diploied) 34.851
CNS0095601Golden flower (diploid) 12.454
CNS0095602Golden flower (diploid) 26.046
CNS0095603Golden flower (diploid) 36.026
CNS0095604Slightly white alabastrum(tetraploid) 14.593
CNS0095605Slightly white alabastrum(tetraploid) 23.836
CNS0095606Slightly white alabastrum(tetraploid) 37.832
CNS0095607Whole white alabastrum(tetraploid) 16.353
CNS0095608Whole white alabastrum(tetraploid) 26.338
CNS0095609Whole white alabastrum(tetraploid) 36.864
CNS0095610Silvery flower (tetraploid) 17.376
CNS0095611Silvery flower (tetraploid) 28.054
CNS0095612Silvery flower (tetraploid) 37.278
CNS0095613Golden flower (tetraploid) 18.089
CNS0095614Golden flower (tetraploid) 25.338
CNS0095615Golden flower (tetraploid) 39.233
CRA001975CRR073297Stem 17.062
CRR073298Stem 27.958
CRR073299Stem 35.250
CRR073300Leaf 18.072
CRR073301Leaf 28.875
CRR073302Leaf 36.630
CRR073303Juvenile bud 16.953
CRR073304Juvenile bud 26.314
CRR073305Juvenile bud 36.231
CRR073306Third green 14.072
CRR073307Third green 23.417
CRR073308Third green 34.512
CRR073309Second white 15.406
CRR073310Second white 24.481
CRR073311Second white 35.153
CRR073312Silver flowering 14.818
CRR073313Silver flowering 23.621
CRR073314Silver flowering 35.218
CRR073315Gold flowering 18.216
CRR073316Gold flowering 27.421
CRR073317Gold flowering 35.994
CRR073318Tawny withering 111.449
CRR073319Tawny withering 25.953
CRR073320Tawny withering 37.335