Gene detail

Detail information of GWHGAAZE001442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007218719.1	5.9627E-174	hypothetical protein PRUPE_ppa009021mg [Prunus persica]
Swissprot	tr\|P59277\|SYP81_ARATH	5E-141	Syntaxin-81
trEMBL	tr\|M5XEH6\|M5XEH6_PRUPE	2E-174	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19918.1}
TAIR10	AT1G51740.1	7E-108	syntaxin of plants 81

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	43247798	43250718	-
GWHAAZE00000001	mRNA	43247798	43250718	-
GWHAAZE00000001	exon	43250647	43250718	-
GWHAAZE00000001	exon	43250464	43250543	-
GWHAAZE00000001	exon	43249891	43249974	-
GWHAAZE00000001	exon	43249691	43249795	-
GWHAAZE00000001	exon	43249357	43249500	-
GWHAAZE00000001	exon	43248686	43248952	-
GWHAAZE00000001	exon	43248434	43248565	-
GWHAAZE00000001	exon	43247987	43248172	-
GWHAAZE00000001	exon	43247798	43247964	-
GWHAAZE00000001	five_prime_UTR	43250647	43250718	-
GWHAAZE00000001	five_prime_UTR	43250542	43250543	-
GWHAAZE00000001	CDS	43250464	43250541	-
GWHAAZE00000001	CDS	43249891	43249974	-
GWHAAZE00000001	CDS	43249691	43249795	-
GWHAAZE00000001	CDS	43249357	43249500	-
GWHAAZE00000001	CDS	43248686	43248952	-
GWHAAZE00000001	CDS	43248434	43248565	-
GWHAAZE00000001	CDS	43248029	43248172	-
GWHAAZE00000001	three_prime_UTR	43247987	43248028	-
GWHAAZE00000001	three_prime_UTR	43247798	43247964	-

Transcript Sequence
>GWHTAAZE001446 TAATGGACTGACGTGCTATGATAATTTTTGGAAACTATTCCAATTAGGCCAATAGAGTTGCTCATATAAGAGGAATGTCGAAAACTAGGGATAGAACTGAAGACTTCAAAGATGCTGTTCACCGGGCGGCTTTGTCTCTGGGTTATACTGAGTCCAAAATGGCAGCCATATTGGCATCTTTCATTATGCAAAAACCTCGACAAAGGTCTTCTTTCACCAAAGCTGCACTCAAGACGCTAGAGAGCATTGGAGAACTGGAGCAGTTCTTAATGAAGCACAGGAAGGATTATATAGATCCACATCGTACTACCGAACAGGAGAGAGATAGCATCGAGCATGAAGTTACAGTTTTTATTAAAGCATGCAAAGAACAGATAGATATTCTCAAAACAAGTATAAATGACAACGAGGCAACGGGGAAGGGTTGGCTTGGTATTAGGGGGGACAATGCTAATGCTGATACAATTGCACACAAACATGGAGTGGTTTTGATTTTAAGCGAAAAGCTTCATGCGGTCACATCACAGTTTGATCAGCTGCGAGTGATACGCTTCCAAGATGCTATAAACCGAGCTATACCAAGAAGAAAAGCTAAGCTGAATGACAGAAGAAATTCTACTGATACCTCTAAGTCTAATAATTTGGAGCACATAGAGCCTAACACTTCTGAAGTGAGAGAGTCTGATGAATTTCAACGTGAGCCTAATACAGTCCAGCAACAACTTTTGGATGATGAGACACGTGCTCTTCAGGCGGAGTTGACAAGTCTTCTAGATGCTGTTCAAGAAACAGAAACAAAGATGATTGAAATGTCTGCATTGAATCATCTCATGTCTACACACGTGCTGCAACAGGCTCAACAGATAGAGCTTCTGTATGAGCAGGCGGTCGAAGCTACAACAAACGTAGAGCTTGGCAACAAAGAACTGTCTCAAGCCATCCAACGAAATAGCAGTAGCAGAACTTTCCTTTTGCTTTTCTTATTTGTACTTACTTTTTCTGTCCTTTTTCTTGATTGGTATGGTTAATTCATAAATGGAGAGATGAATTTTGAAGGATTTAATAGGCAAGAAAAAAGGACTAACTCATTAGTTAATCAAATTTGTGAAAATGCTTGTACGTAAATGGGATGAACCTTTTCTTTGTGTATTAACTTTTATGTGTTACTGTGTATATATATGCATATATACACCCTCCTTGGAGAGGTTTTTACATTATGCACAGAAAAATATTTGAG

Network for GWHGAAZE001442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10496.10	Syntaxin-18_N	5	86	6.90E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08492	STX18	SNARE interactions in vesicular transport	map04130
K08492	STX18	Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.813
	SRR3591706	second leaf	5.151
	SRR3591707	mature leaf	6.108
	SRR3591708	Shoot apex	8.444
	SRR3591709	Stem	13.761
	SRR3591710	White floral bud	0.675
	SRR3591711	White flower	0.529
	SRR3591712	Green floral bud	1.106
	SRR3591713	Yellow flower	0.750
SRP173429	SRR8316895	Juvenile bud stage	7.206
	SRR8316896	Juvenile bud stage	9.694
	SRR8316897	Juvenile bud stage	4.009
	SRR8316894	Third green stage	4.329
	SRR8316900	Third green stage	10.702
	SRR8316901	Third green stage	9.976
	SRR8316898	Complete white stage	4.646
	SRR8316899	Complete white stage	13.150
	SRR8316903	Complete white stage	8.075
	SRR8316902	Silver flowering stage	6.774
	SRR8316904	Silver flowering stage	8.239
	SRR8316905	Silver flowering stage	2.878
	SRR8316906	Gold flowering stage	11.289
	SRR8316907	Gold flowering stage	11.076
	SRR8316908	Gold flowering stage	7.841
SRP132670	SRR6706286	Control	6.982
	SRR6706287	Light intensity 50%	7.609
	SRR6706288	Light intensity 20%	7.618
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.415
	CNS0095593	Slightly white alabastrum(diploid) 2	10.554
	CNS0095594	Slightly white alabastrum(diploid) 3	10.324
	CNS0095595	Whole white alabastrum(diploid) 2	8.308
	CNS0095596	Whole white alabastrum(diploid) 3	8.588
	CNS0095597	Whole white alabastrum(diploid) 4	9.359
	CNS0095598	Silvery flower (diploied) 1	10.937
	CNS0095599	Silvery flower (diploied) 2	8.418
	CNS0095600	Silvery flower (diploied) 3	9.718
	CNS0095601	Golden flower (diploid) 1	10.526
	CNS0095602	Golden flower (diploid) 2	9.343
	CNS0095603	Golden flower (diploid) 3	9.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.757
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.820
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.314
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.025
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.290
	CNS0095610	Silvery flower (tetraploid) 1	13.679
	CNS0095611	Silvery flower (tetraploid) 2	11.556
	CNS0095612	Silvery flower (tetraploid) 3	11.723
	CNS0095613	Golden flower (tetraploid) 1	11.460
	CNS0095614	Golden flower (tetraploid) 2	11.260
	CNS0095615	Golden flower (tetraploid) 3	9.369
CRA001975	CRR073297	Stem 1	9.689
	CRR073298	Stem 2	7.871
	CRR073299	Stem 3	7.178
	CRR073300	Leaf 1	8.157
	CRR073301	Leaf 2	9.164
	CRR073302	Leaf 3	5.330
	CRR073303	Juvenile bud 1	4.863
	CRR073304	Juvenile bud 2	4.955
	CRR073305	Juvenile bud 3	5.723
	CRR073306	Third green 1	1.938
	CRR073307	Third green 2	2.337
	CRR073308	Third green 3	3.298
	CRR073309	Second white 1	1.825
	CRR073310	Second white 2	4.002
	CRR073311	Second white 3	4.387
	CRR073312	Silver flowering 1	2.587
	CRR073313	Silver flowering 2	1.535
	CRR073314	Silver flowering 3	2.485
	CRR073315	Gold flowering 1	4.537
	CRR073316	Gold flowering 2	4.781
	CRR073317	Gold flowering 3	1.336
	CRR073318	Tawny withering 1	11.894
	CRR073319	Tawny withering 2	12.748
	CRR073320	Tawny withering 3	10.802