Detail information of GWHGAAZE001440


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283248.21.3139E-130PREDICTED: octanoyltransferase isoform X3 [Vitis vinifera]
Swissprottr|Q9SXP7|LIPB_ARATH1E-124Octanoyltransferase
trEMBLtr|F6GUD8|F6GUD8_VITVI1E-129Putative uncharacterized protein {ECO:0000313|EMBL:CCB43759.1}
TAIR10AT1G04640.26E-99lipoyltransferase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene4322896843229618-
GWHAAZE00000001mRNA4322896843229618-
GWHAAZE00000001exon4322896843229618-
GWHAAZE00000001CDS4322896843229618-
Transcript Sequence

Network for GWHGAAZE001440

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03099.20BPL_LplA_LipB501575.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K23735LIPT2, LIP2 Metabolic pathways map01100
Lipoic acid metabolismmap00785

Gene Ontology

GO term OntologyName
GO:0009249biological_processprotein lipoylation
GO:0006464biological_processcellular protein modification process
GO:0033819molecular_functionlipoyl(octanoyl) transferase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE001440.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30246810121416182022Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.605
SRR3591706second leaf9.805
SRR3591707mature leaf9.491
SRR3591708Shoot apex20.085
SRR3591709Stem17.518
SRR3591710White floral bud14.254
SRR3591711White flower17.273
SRR3591712Green floral bud16.184
SRR3591713Yellow flower19.329
SRP173429 SRR8316895Juvenile bud stage 6.853
SRR8316896Juvenile bud stage 10.713
SRR8316897Juvenile bud stage 1.754
SRR8316894Third green stage 4.068
SRR8316900Third green stage 12.040
SRR8316901Third green stage 12.343
SRR8316898Complete white stage 6.923
SRR8316899Complete white stage 19.801
SRR8316903Complete white stage 7.733
SRR8316902Silver flowering stage6.819
SRR8316904Silver flowering stage9.373
SRR8316905Silver flowering stage4.865
SRR8316906Gold flowering stage 20.556
SRR8316907Gold flowering stage 19.186
SRR8316908Gold flowering stage 12.370
SRP132670SRR6706286Control13.363
SRR6706287Light intensity 50%14.834
SRR6706288Light intensity 20%13.072
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.568
CNS0095593Slightly white alabastrum(diploid) 28.503
CNS0095594Slightly white alabastrum(diploid) 36.769
CNS0095595Whole white alabastrum(diploid) 210.378
CNS0095596Whole white alabastrum(diploid) 311.783
CNS0095597Whole white alabastrum(diploid) 411.439
CNS0095598Silvery flower (diploied) 19.022
CNS0095599Silvery flower (diploied) 25.764
CNS0095600Silvery flower (diploied) 313.426
CNS0095601Golden flower (diploid) 17.068
CNS0095602Golden flower (diploid) 211.956
CNS0095603Golden flower (diploid) 311.748
CNS0095604Slightly white alabastrum(tetraploid) 16.568
CNS0095605Slightly white alabastrum(tetraploid) 27.919
CNS0095606Slightly white alabastrum(tetraploid) 38.846
CNS0095607Whole white alabastrum(tetraploid) 14.987
CNS0095608Whole white alabastrum(tetraploid) 25.272
CNS0095609Whole white alabastrum(tetraploid) 38.845
CNS0095610Silvery flower (tetraploid) 111.368
CNS0095611Silvery flower (tetraploid) 29.174
CNS0095612Silvery flower (tetraploid) 38.467
CNS0095613Golden flower (tetraploid) 111.503
CNS0095614Golden flower (tetraploid) 210.409
CNS0095615Golden flower (tetraploid) 310.023
CRA001975CRR073297Stem 18.683
CRR073298Stem 29.354
CRR073299Stem 39.245
CRR073300Leaf 19.054
CRR073301Leaf 210.528
CRR073302Leaf 39.964
CRR073303Juvenile bud 19.117
CRR073304Juvenile bud 26.870
CRR073305Juvenile bud 36.658
CRR073306Third green 15.222
CRR073307Third green 24.551
CRR073308Third green 34.175
CRR073309Second white 18.541
CRR073310Second white 25.700
CRR073311Second white 35.525
CRR073312Silver flowering 16.385
CRR073313Silver flowering 26.487
CRR073314Silver flowering 35.983
CRR073315Gold flowering 18.267
CRR073316Gold flowering 211.532
CRR073317Gold flowering 37.436
CRR073318Tawny withering 17.694
CRR073319Tawny withering 29.256
CRR073320Tawny withering 37.324