Gene detail

Detail information of GWHGAAZE001407

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AID55346.1	0	EIN3-like protein EIL4 [Actinidia chinensis]
Swissprot	tr\|O23116\|EIL3_ARATH	9E-165	ETHYLENE INSENSITIVE 3-like 3 protein
trEMBL	tr\|A0A075EB47\|A0A075EB47_ACTCH	0	EIN3-like protein EIL4 {ECO:0000313\|EMBL:AID55346.1}
TAIR10	AT1G73730.1	8E-121	ETHYLENE-INSENSITIVE3-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	36465749	36468443	-
GWHAAZE00000001	mRNA	36465749	36468443	-
GWHAAZE00000001	exon	36465749	36467762	-
GWHAAZE00000001	exon	36468409	36468443	-
GWHAAZE00000001	CDS	36468409	36468443	-
GWHAAZE00000001	CDS	36465749	36467762	-

Transcript Sequence
>GWHTAAZE001411 ATGGGTGTATTTGAAGAGATTGGGGTTGATATCAGCTCGGATATCGAAGTTGATGATGACATAAGGATTGACAATATAGAAGAGAAAGACGTGAGCGATGAAGAGATAGACCCAGAAGATTTAAAGAAGCGAATGTGGAAAGACGGTATTAAGCTCAAGAGAATCCAAGAAAGGAAGAAGAAAAAGCTCGAAGCCCAACAAGCCGCTGAGAAGCAAAAGAACAACAAGCATTCCGTCGATCATGCTCAACGCAAGAAAATGTCTAGAGCTCAAGATGGGATTTTGAAATACATGTTGAAGCTTATGGAAGTGTGCAAAGCCCGTGGATTCGTTTACGGTATAATCCCCGAAAAGGGCAAGCCTGTTAGCGGTTCGTCAGATAACCTAAGAGCGTGGTGGAAAGAAAAGGTGAAGTTTGACAAGAATGGACCGGCGGCTGTAGCCAAGTATGAAGCAGAGTGTATAGCCATGGGGGTGGAACACGGTTCTCAAAATGGGAACCCGCAAAGTGTTCTTCAAGATTTGCAAGACGCAACTTTAGGGTCGCTTTTGTCTTCATTGATGCAACATTGTAGCCCACCTCAGAGAAAGTACCCACTTGACAAGCTTGTACCGCCACCATGGTGGCCCACCGGTAGCGAAGAATGGTGGGCAATGTTAGGGTTACCCGAAGGTCAGAGTCCGCCATACAGGAAGCCGCATGATTTGAAGAAGATGTGGAAAGTCGGGGTTCTTACTGCTGTGATAAAGCATATGTCACCAGATATAGCAAAGATAAGGAAGCTAGTGCGGCAGTCAAAGTGCTTGCAGGATAAGATGACAGCTAAGGAGAGCTCGATTTGGTTGGGGGTTTTGAGCCGTGAGGAAGCCCTTATTCGGCAGCCTAGTAGCGAAAACGGGGGGTCTGGGATAACGGAGGCACCCTCCCGCCATAATGCTAAAACGACCAAACCTTCCAATAGCTGTGATAGTGACTATGACGTTGATGGCATAGATGATAGTGCGGTTTCTTTTTCGTCGATAAATGGTAAGAGAAACCGACCAATGGATACTGAGCCTTCGGGTCGTTCTAGCGTTTCCCCCGTAACGGTAAGGCATAAAGAGAAACCAACGAAGAAGCCAAGACATAAGCCTCGTGAGGGAACAAACACGCTGACGGATATAAAGCAGTCTGATTTACATTTGGCTCAGAACCAGACAAACATAAGCCAACCGGAAAATGACACAAATACGGCTTCGAGTCCTTTGGAGAAAGATAGTGAAGTTGAATTACCATCACATATATCAGAGTTTAACAATTTCTCCAGTCTCGGTTCTGCCAATGTAAGCTCACAGAGCTTGTTTGAGGGTAGTATGCCCTTGGTTTATCCGCCCAACCACGGTTCTTGGCACAGGCCCCACGAACCGGGGTTGGCTCCAGTACCCCAACCGTCTCCATTTGAAAGTGGGCCCCAAAACAATGGTTCTTGGCATGGACCCAACGAGCCGGGGTTGGCTCAAGTACCCCAATGGGCTTCGTTGGTAAGTGGGCATCAAAACAACGATTCTTGGCAGGGATCCCACGAGCCAGGGTTGGCTCGAGTGCCTCAACAGTCTCCACTGGAAAGCAGGCCCCAAGATGACTATTCTTGGCATGGACCCCAGGAGCCGGGGTTGGCTCAAGTACCCCACCAGTCTCAGTTGGAAAGCGGGCCCCAAAACGATGCTTCGTTTTATGGACCTCAAAATGATGATTCACACAAATACCCTGCTTATGATCTCTATAACCCGCCTCTCACATTCGGGGCTAGTGGCAGTGAACAGCAGTCCCAGATGATATATAATGAACAACATCCAGTAAGGGCGGATTATGTGAAAGAAAGATTTCCAAATGAGCTAGATCGGACAGTTGAGAATCATTTTGGGTCCCCAATCAATAGCCTGTCGCTAGATTTTGGAGCATTGAATAGTCCGTTTAATTTCGGATTTGAAGGCACAACTTCTTTAGATCCTGACGACTTTTTACTTGATGAACTTGATGAAGAACTGATGCAGTGCTGCTGTGCGTAA

Network for GWHGAAZE001407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04873.14	EIN3	39	289	5.10E-124

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	EIL

KEGG pathway

KO	Enzyme	pathway	mapID
K14514	EIN3	MAPK signaling pathway - plant	map04016
K14514	EIN3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.708
	SRR3591706	second leaf	9.171
	SRR3591707	mature leaf	10.501
	SRR3591708	Shoot apex	12.518
	SRR3591709	Stem	17.315
	SRR3591710	White floral bud	11.753
	SRR3591711	White flower	19.781
	SRR3591712	Green floral bud	7.290
	SRR3591713	Yellow flower	23.304
SRP173429	SRR8316895	Juvenile bud stage	4.104
	SRR8316896	Juvenile bud stage	6.104
	SRR8316897	Juvenile bud stage	5.275
	SRR8316894	Third green stage	2.787
	SRR8316900	Third green stage	5.937
	SRR8316901	Third green stage	6.300
	SRR8316898	Complete white stage	4.399
	SRR8316899	Complete white stage	9.660
	SRR8316903	Complete white stage	6.901
	SRR8316902	Silver flowering stage	7.212
	SRR8316904	Silver flowering stage	10.177
	SRR8316905	Silver flowering stage	5.297
	SRR8316906	Gold flowering stage	19.208
	SRR8316907	Gold flowering stage	15.051
	SRR8316908	Gold flowering stage	28.510
SRP132670	SRR6706286	Control	7.264
	SRR6706287	Light intensity 50%	7.774
	SRR6706288	Light intensity 20%	7.841
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.239
	CNS0095593	Slightly white alabastrum(diploid) 2	5.912
	CNS0095594	Slightly white alabastrum(diploid) 3	4.715
	CNS0095595	Whole white alabastrum(diploid) 2	4.082
	CNS0095596	Whole white alabastrum(diploid) 3	2.550
	CNS0095597	Whole white alabastrum(diploid) 4	3.537
	CNS0095598	Silvery flower (diploied) 1	7.896
	CNS0095599	Silvery flower (diploied) 2	6.119
	CNS0095600	Silvery flower (diploied) 3	16.110
	CNS0095601	Golden flower (diploid) 1	6.783
	CNS0095602	Golden flower (diploid) 2	14.680
	CNS0095603	Golden flower (diploid) 3	15.645
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.352
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.764
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.945
	CNS0095610	Silvery flower (tetraploid) 1	33.588
	CNS0095611	Silvery flower (tetraploid) 2	26.353
	CNS0095612	Silvery flower (tetraploid) 3	48.294
	CNS0095613	Golden flower (tetraploid) 1	30.631
	CNS0095614	Golden flower (tetraploid) 2	30.645
	CNS0095615	Golden flower (tetraploid) 3	46.264
CRA001975	CRR073297	Stem 1	8.832
	CRR073298	Stem 2	8.172
	CRR073299	Stem 3	5.664
	CRR073300	Leaf 1	11.055
	CRR073301	Leaf 2	9.383
	CRR073302	Leaf 3	5.543
	CRR073303	Juvenile bud 1	6.459
	CRR073304	Juvenile bud 2	5.197
	CRR073305	Juvenile bud 3	6.875
	CRR073306	Third green 1	6.692
	CRR073307	Third green 2	6.721
	CRR073308	Third green 3	8.200
	CRR073309	Second white 1	7.267
	CRR073310	Second white 2	12.031
	CRR073311	Second white 3	13.853
	CRR073312	Silver flowering 1	13.483
	CRR073313	Silver flowering 2	12.344
	CRR073314	Silver flowering 3	12.336
	CRR073315	Gold flowering 1	3.019
	CRR073316	Gold flowering 2	4.265
	CRR073317	Gold flowering 3	1.961
	CRR073318	Tawny withering 1	4.690
	CRR073319	Tawny withering 2	6.567
	CRR073320	Tawny withering 3	4.031