Gene detail

Detail information of GWHGAAZE001360

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008227833.1	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Prunus mume]
Swissprot	tr\|O22899\|DHX15_ARATH	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|W9QW63\|W9QW63_9ROSA	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase {ECO:0000313\|EMBL:EXB55979.1}
TAIR10	AT2G47250.1	RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	33550499	33552081	+
GWHAAZE00000001	mRNA	33550499	33552081	+
GWHAAZE00000001	exon	33550499	33551162	+
GWHAAZE00000001	exon	33551575	33551700	+
GWHAAZE00000001	exon	33551807	33552081	+
GWHAAZE00000001	CDS	33550499	33551162	+
GWHAAZE00000001	CDS	33551575	33551700	+
GWHAAZE00000001	CDS	33551807	33552081	+

Transcript Sequence
>GWHTAAZE001364 ATGGGAGATACCGTGGGGCCTGTGAAAGTTGTGCCTCTGTATTCAACACTTCCTCCTGCTATGCAGCAAAAGATATTTGACCCTGCTCCACCTCCAATTACTGAAGGTGGTCCGGCTGGAAGGAAGATTGTAGTGTCAACAAACATTGCAGAAACTTCTTTGACCATAGATGGCATAGTTTATGTCATAGATCCTGGGTTTGCTAAACAGAAAGTGTATAACCCACGAGTGCGTGTTGAATCGTTGTTGGTCTCCCCAATATCAAAGGCAAGTGCTCACCAGAGGTCAGGGCGTGCTGGAAGAACTCAACCCGGCAAATGTTTCAGACTTTACACAGAGAGAAGTTTCCATAACGATCTGCAGCCACAGACGTACCCAGAGATACTTCGGTCAAACCTTGCAAATACGGTTCTCACTCTGAAGAAACTAGGGATAGATGACCTTGTACATTTTGATTTTATGGACCCTCCTGCTCCTGAGACACTGATGAGAGCACTGGAGGTATTGAATTACTTGGGAGCACTGGATGATGAGGGAAACTTGACCAAGCTTGGTGAGATCATGAGTGAATTTCCCCTAGATCCTCAGATGGCTAAGATGCTTGTTGTCAGCGCTGAATTCAACTGTTCAAATGAAATTCTTTCGATATCTGCTATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAAAAGGCTGCAGATGAAGCGAAAGCTCGGTTTGGGCACATTGACGGGGATCACCTCACACTCTTGAATGTATACCATGCATACAAGCAAAACAATGAGGATCAATCATGGTGCTACGAAAATTTTGTAAACCAAAGGGCACTTAAATCTGCGGATAGTGTGAGACAACAGCTAGCTCGGATCATGGCCAGGTTTAACATCAAGCTATGCAGCACAGATTTTAACAGCCGGGAATACTACCTCAATATCAGAAAGGCTATGTTAGCTGGTTATTTCATGCAGGTTGCTCACCTGGAGCGTACTGGGCACTATTTGACTGTGAAAGACAATCAAGCAAGTCTCTTACTTGTTTTATGCTGCATACAGTAA

Network for GWHGAAZE001360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00271.32	Helicase_C	8	102	7.70E-08
PF04408.24	HA2	165	253	2.30E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12820	DHX15, PRP43	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.736
	SRR3591706	second leaf	30.063
	SRR3591707	mature leaf	27.379
	SRR3591708	Shoot apex	37.940
	SRR3591709	Stem	37.701
	SRR3591710	White floral bud	37.303
	SRR3591711	White flower	44.836
	SRR3591712	Green floral bud	38.662
	SRR3591713	Yellow flower	35.911
SRP173429	SRR8316895	Juvenile bud stage	31.937
	SRR8316896	Juvenile bud stage	40.353
	SRR8316897	Juvenile bud stage	17.036
	SRR8316894	Third green stage	17.211
	SRR8316900	Third green stage	41.583
	SRR8316901	Third green stage	42.975
	SRR8316898	Complete white stage	11.831
	SRR8316899	Complete white stage	48.929
	SRR8316903	Complete white stage	27.536
	SRR8316902	Silver flowering stage	16.535
	SRR8316904	Silver flowering stage	21.139
	SRR8316905	Silver flowering stage	9.951
	SRR8316906	Gold flowering stage	32.389
	SRR8316907	Gold flowering stage	26.961
	SRR8316908	Gold flowering stage	27.953
SRP132670	SRR6706286	Control	44.938
	SRR6706287	Light intensity 50%	43.787
	SRR6706288	Light intensity 20%	44.735
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.545
	CNS0095593	Slightly white alabastrum(diploid) 2	24.143
	CNS0095594	Slightly white alabastrum(diploid) 3	22.330
	CNS0095595	Whole white alabastrum(diploid) 2	23.195
	CNS0095596	Whole white alabastrum(diploid) 3	17.296
	CNS0095597	Whole white alabastrum(diploid) 4	22.198
	CNS0095598	Silvery flower (diploied) 1	31.501
	CNS0095599	Silvery flower (diploied) 2	34.649
	CNS0095600	Silvery flower (diploied) 3	42.722
	CNS0095601	Golden flower (diploid) 1	25.662
	CNS0095602	Golden flower (diploid) 2	42.467
	CNS0095603	Golden flower (diploid) 3	38.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.446
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.623
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.864
	CNS0095610	Silvery flower (tetraploid) 1	45.550
	CNS0095611	Silvery flower (tetraploid) 2	39.025
	CNS0095612	Silvery flower (tetraploid) 3	38.198
	CNS0095613	Golden flower (tetraploid) 1	20.508
	CNS0095614	Golden flower (tetraploid) 2	38.491
	CNS0095615	Golden flower (tetraploid) 3	32.373
CRA001975	CRR073297	Stem 1	51.282
	CRR073298	Stem 2	50.540
	CRR073299	Stem 3	47.774
	CRR073300	Leaf 1	51.785
	CRR073301	Leaf 2	49.688
	CRR073302	Leaf 3	35.377
	CRR073303	Juvenile bud 1	37.040
	CRR073304	Juvenile bud 2	26.570
	CRR073305	Juvenile bud 3	46.798
	CRR073306	Third green 1	16.475
	CRR073307	Third green 2	14.946
	CRR073308	Third green 3	16.682
	CRR073309	Second white 1	14.589
	CRR073310	Second white 2	22.732
	CRR073311	Second white 3	19.456
	CRR073312	Silver flowering 1	21.365
	CRR073313	Silver flowering 2	24.312
	CRR073314	Silver flowering 3	25.704
	CRR073315	Gold flowering 1	25.767
	CRR073316	Gold flowering 2	33.612
	CRR073317	Gold flowering 3	23.546
	CRR073318	Tawny withering 1	41.704
	CRR073319	Tawny withering 2	40.637
	CRR073320	Tawny withering 3	38.393