Gene detail

Detail information of GWHGAAZE001344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278967.1	9.3554E-127	PREDICTED: uncharacterized protein LOC104612993 [Nelumbo nucifera]
trEMBL	tr\|I3SHQ4\|I3SHQ4_LOTJA	6E-126	Uncharacterized protein {ECO:0000313\|EMBL:AFK39796.1}
TAIR10	AT3G20920.1	3E-89	translocation protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	32985152	32995915	+
GWHAAZE00000001	mRNA	32985152	32995915	+
GWHAAZE00000001	exon	32985152	32985224	+
GWHAAZE00000001	exon	32988031	32988104	+
GWHAAZE00000001	exon	32988631	32988945	+
GWHAAZE00000001	exon	32991279	32991424	+
GWHAAZE00000001	exon	32992198	32992256	+
GWHAAZE00000001	exon	32994358	32994586	+
GWHAAZE00000001	exon	32995693	32995915	+
GWHAAZE00000001	CDS	32985152	32985224	+
GWHAAZE00000001	CDS	32988031	32988104	+
GWHAAZE00000001	CDS	32988631	32988945	+
GWHAAZE00000001	CDS	32991279	32991424	+
GWHAAZE00000001	CDS	32992198	32992256	+
GWHAAZE00000001	CDS	32994358	32994586	+
GWHAAZE00000001	CDS	32995693	32995915	+

Transcript Sequence
>GWHTAAZE001348 ATGCGATCTCCATCTGTGGCGATCGGAGATTGGGCACTATCTCTCTCTGTCTCAATTTCTAGAGTTTGGGGAGGGGTGGAGCTCTGTATTGGGATTTGTAACTTTTTTATGAAGGCTGTCCCGGAAGTTTATGGGTTTTGGTATTTGAAGCAAGCGAACAAGAAGGATGTGTTTCAATTGTTTGCTGAGAAGGTAAGAGACCATAAAGATTTGGTGTCTAGATGGGCTGTTTTACAGGAGACCCGTGTTGAATATTTTAGAGGAAAGGATTTTGTTAGCTTTTTGAGGAATCATTCAGAGCTGAAAGAGATACTAGAATCTGATAGAAATCTAGAAGTAGAAGATATTGCCAATGTCCTGCTCGCAAAGAATCTTTTAGTGCGATGTGATCGTGTGCTGAAAACCGTTCGACCTGGAAAGAGAAAATTGTCTACCTGGCCTGCACATTTAGAGATATTCCCAACCACTGTGGCAAACACTTCTTTCATTTTTCTGGCCCGTGTTGACCCTTGCGATTTGCCTATTTCCCGTATATCCTCATCGGTGCAAGCTACTGATACTCTACTTATGTGCGGGGATCCTCCTCCTTATACTTTGCCTGCTTACTTGTTTGTGAGGGGTTATGCGTGGGCGGGTTGGGCTGGGTTTGGGAGTGCGAAGGTGCGCTTGAGAGCCCTAGTCTTTGGTGCTGCATGGATCCTTCTTGGAAAGCGTATCTGGTTTTTCCCCAACATACTTGCAGAGGAAGCAACACTACGCGAACTATTCCGTTTCTGGCCTAAGAAGGATGAGGAGGAGCGGCCAAAGTGGACAGCAAGGCTTTTCTTTGCAGTAGTTTCTGCCCTTGTGATTTTACTTCTGAGGCATCATGCCCCTGATGAGGCCGCTAGAGCCAGGTACCAGAAGCGGGTTTCCAACATTATTGATGATGTTCTTGAGTGGAACCCAAGACTGGCCTTGTCGGGTATGATGGATAATATGCAGCAAACAGATCCGCCACCTGATGATAATACGCAGCAAACAACTCCACCACATGATGATCCCATGGAAGAAAACATGAGAGATATACAAGAGGGGGAAGAATTTATCCAAAGCTTGATCAATCATGATGATATGTGA

Network for GWHGAAZE001344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12275	SEC62	Protein export	map03060
K12275	SEC62	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.251
	SRR3591706	second leaf	5.082
	SRR3591707	mature leaf	4.990
	SRR3591708	Shoot apex	12.045
	SRR3591709	Stem	13.650
	SRR3591710	White floral bud	17.565
	SRR3591711	White flower	15.020
	SRR3591712	Green floral bud	20.372
	SRR3591713	Yellow flower	12.886
SRP173429	SRR8316895	Juvenile bud stage	15.408
	SRR8316896	Juvenile bud stage	25.966
	SRR8316897	Juvenile bud stage	8.228
	SRR8316894	Third green stage	9.117
	SRR8316900	Third green stage	26.125
	SRR8316901	Third green stage	23.489
	SRR8316898	Complete white stage	14.967
	SRR8316899	Complete white stage	33.619
	SRR8316903	Complete white stage	19.449
	SRR8316902	Silver flowering stage	13.249
	SRR8316904	Silver flowering stage	14.901
	SRR8316905	Silver flowering stage	6.613
	SRR8316906	Gold flowering stage	20.477
	SRR8316907	Gold flowering stage	21.576
	SRR8316908	Gold flowering stage	21.518
SRP132670	SRR6706286	Control	19.259
	SRR6706287	Light intensity 50%	20.421
	SRR6706288	Light intensity 20%	21.750
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.843
	CNS0095593	Slightly white alabastrum(diploid) 2	23.117
	CNS0095594	Slightly white alabastrum(diploid) 3	18.490
	CNS0095595	Whole white alabastrum(diploid) 2	19.952
	CNS0095596	Whole white alabastrum(diploid) 3	23.610
	CNS0095597	Whole white alabastrum(diploid) 4	19.370
	CNS0095598	Silvery flower (diploied) 1	10.739
	CNS0095599	Silvery flower (diploied) 2	10.488
	CNS0095600	Silvery flower (diploied) 3	16.584
	CNS0095601	Golden flower (diploid) 1	10.908
	CNS0095602	Golden flower (diploid) 2	14.364
	CNS0095603	Golden flower (diploid) 3	13.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.679
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.889
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.480
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.016
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.700
	CNS0095610	Silvery flower (tetraploid) 1	14.665
	CNS0095611	Silvery flower (tetraploid) 2	13.758
	CNS0095612	Silvery flower (tetraploid) 3	23.785
	CNS0095613	Golden flower (tetraploid) 1	7.964
	CNS0095614	Golden flower (tetraploid) 2	10.270
	CNS0095615	Golden flower (tetraploid) 3	10.460
CRA001975	CRR073297	Stem 1	19.283
	CRR073298	Stem 2	18.287
	CRR073299	Stem 3	19.277
	CRR073300	Leaf 1	20.935
	CRR073301	Leaf 2	17.309
	CRR073302	Leaf 3	15.929
	CRR073303	Juvenile bud 1	20.050
	CRR073304	Juvenile bud 2	20.839
	CRR073305	Juvenile bud 3	15.478
	CRR073306	Third green 1	23.527
	CRR073307	Third green 2	19.748
	CRR073308	Third green 3	19.569
	CRR073309	Second white 1	10.042
	CRR073310	Second white 2	14.934
	CRR073311	Second white 3	12.790
	CRR073312	Silver flowering 1	9.360
	CRR073313	Silver flowering 2	7.359
	CRR073314	Silver flowering 3	10.803
	CRR073315	Gold flowering 1	5.204
	CRR073316	Gold flowering 2	4.731
	CRR073317	Gold flowering 3	3.040
	CRR073318	Tawny withering 1	16.837
	CRR073319	Tawny withering 2	15.059
	CRR073320	Tawny withering 3	19.127