Gene detail

Detail information of GWHGAAZE001340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015067.1	0	Calcium-dependent protein kinase 19 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q38873\|CDPK7_ARATH	0	Calcium-dependent protein kinase 7
trEMBL	tr\|A0A061GT93\|A0A061GT93_THECC	0	Calcium-dependent protein kinase 19 isoform 1 {ECO:0000313\|EMBL:EOY32686.1}
TAIR10	AT5G12480.1	9E-157	calmodulin-domain protein kinase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	32885077	32890831	-
GWHAAZE00000001	mRNA	32885077	32890831	-
GWHAAZE00000001	exon	32885077	32885216	-
GWHAAZE00000001	exon	32886030	32886182	-
GWHAAZE00000001	exon	32886922	32887065	-
GWHAAZE00000001	exon	32887697	32887820	-
GWHAAZE00000001	exon	32890235	32890619	-
GWHAAZE00000001	exon	32890806	32890831	-
GWHAAZE00000001	CDS	32890806	32890831	-
GWHAAZE00000001	CDS	32890235	32890619	-
GWHAAZE00000001	CDS	32887697	32887820	-
GWHAAZE00000001	CDS	32886922	32887065	-
GWHAAZE00000001	CDS	32886030	32886182	-
GWHAAZE00000001	CDS	32885077	32885216	-

Transcript Sequence
>GWHTAAZE001344 ATGATTAAACAGAGAAAAAGTAAAAGGTCTGTGCTAAACGATCCAACAGGTCATGATATTTCGCAGAAATATGATCTGGGTCGTGAACTTGGGAGAGGTGAATTTGGGATAACCTATTTGTGTACTGATGTACAAACTGGTGAGAAATTCGCGTGTAAATCGATATTGAAAAAGGAATTGAGGACTGCAGTGGATATTGAGGATGTGAGGAGAGAAGTGGAGATTATGAATCATTTGCCTAAGCATCCGAATATTGTGAGTATTAAGGATACGTTTGAGGATGATAGTGCTGTCCATATTGTGATGGAATTGTGTGAGGGAGGTGAGTTGTTCGATAGGATTGAAAATAGGGGGCATTATACTGAGAGAGATGCGGCTTCTGTTATGAGGACAATTGTCGAAGTTGTTCAGATTTGTCACAGGCATGGAGTGATGCATCGCGATCTCAAACCGGAGAATTTCCTTTTTGCAAACACGAAGGAAACGGCTCCCTTAAAAGCCATCGATTTTGGGTTGTCAGTATTTTTTAAACCTGGTGAGCGGTTCAGTGAGATAGCGGGAAGTCCTTATTACCTGGCCCCAGAAGTACTAAGACAAAATTACGGACCGGAGGTTGATGTGTGGAGTGCTGGTGTTATCTTGTACATTTTACTTTGCGGTGTTCCTCCTTTCTGGGCAGAAACTGAGCAAGAAGTAGCACAAGCTATTATTCGATCGAAAGTGCAATTTAAGGGAGATCCGTGGCCTAAAGTTTCTGATAGTGCAAAGGATCTGGTAAAGAAAATGCTTGAACCTGACCCAAAATGGCGTCTTACAGCTAAGCAAGTCCTTGAGCACCCGTGGCTACAAGATTCGAGCAAGGCGCCAAATAGGCTATTAGGCGAGGTTGTAAGAATAAGGCTCAAACAATTATCTACGACGAATAAGCTCAAGAAAAGAGCTTTAAGGGTAATAATTCAAATGCTTCCATAA

Network for GWHGAAZE001340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	24	282	1.80E-77

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.593
	SRR3591706	second leaf	22.270
	SRR3591707	mature leaf	70.840
	SRR3591708	Shoot apex	0.939
	SRR3591709	Stem	2.937
	SRR3591710	White floral bud	86.338
	SRR3591711	White flower	30.731
	SRR3591712	Green floral bud	70.610
	SRR3591713	Yellow flower	3.093
SRP173429	SRR8316895	Juvenile bud stage	1.431
	SRR8316896	Juvenile bud stage	1.979
	SRR8316897	Juvenile bud stage	1.908
	SRR8316894	Third green stage	2.170
	SRR8316900	Third green stage	30.961
	SRR8316901	Third green stage	38.630
	SRR8316898	Complete white stage	52.513
	SRR8316899	Complete white stage	119.081
	SRR8316903	Complete white stage	92.291
	SRR8316902	Silver flowering stage	21.313
	SRR8316904	Silver flowering stage	32.267
	SRR8316905	Silver flowering stage	15.303
	SRR8316906	Gold flowering stage	7.063
	SRR8316907	Gold flowering stage	19.141
	SRR8316908	Gold flowering stage	15.279
SRP132670	SRR6706286	Control	21.731
	SRR6706287	Light intensity 50%	24.217
	SRR6706288	Light intensity 20%	26.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.783
	CNS0095593	Slightly white alabastrum(diploid) 2	4.938
	CNS0095594	Slightly white alabastrum(diploid) 3	4.022
	CNS0095595	Whole white alabastrum(diploid) 2	15.425
	CNS0095596	Whole white alabastrum(diploid) 3	17.069
	CNS0095597	Whole white alabastrum(diploid) 4	21.664
	CNS0095598	Silvery flower (diploied) 1	1.721
	CNS0095599	Silvery flower (diploied) 2	3.255
	CNS0095600	Silvery flower (diploied) 3	20.452
	CNS0095601	Golden flower (diploid) 1	0.367
	CNS0095602	Golden flower (diploid) 2	1.558
	CNS0095603	Golden flower (diploid) 3	1.373
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.769
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.409
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.621
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.611
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.349
	CNS0095610	Silvery flower (tetraploid) 1	10.769
	CNS0095611	Silvery flower (tetraploid) 2	2.553
	CNS0095612	Silvery flower (tetraploid) 3	2.802
	CNS0095613	Golden flower (tetraploid) 1	0.605
	CNS0095614	Golden flower (tetraploid) 2	2.371
	CNS0095615	Golden flower (tetraploid) 3	0.831
CRA001975	CRR073297	Stem 1	0.465
	CRR073298	Stem 2	1.024
	CRR073299	Stem 3	0.384
	CRR073300	Leaf 1	19.712
	CRR073301	Leaf 2	11.278
	CRR073302	Leaf 3	11.678
	CRR073303	Juvenile bud 1	27.442
	CRR073304	Juvenile bud 2	40.681
	CRR073305	Juvenile bud 3	29.544
	CRR073306	Third green 1	31.228
	CRR073307	Third green 2	42.980
	CRR073308	Third green 3	28.968
	CRR073309	Second white 1	1.178
	CRR073310	Second white 2	2.291
	CRR073311	Second white 3	0.105
	CRR073312	Silver flowering 1	0.205
	CRR073313	Silver flowering 2	0.591
	CRR073314	Silver flowering 3	0.589
	CRR073315	Gold flowering 1	15.997
	CRR073316	Gold flowering 2	17.728
	CRR073317	Gold flowering 3	14.249
	CRR073318	Tawny withering 1	8.152
	CRR073319	Tawny withering 2	14.581
	CRR073320	Tawny withering 3	7.534