Gene detail

Detail information of GWHGAAZE001325

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010246834.1	2.7204E-108	PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q9M209\|CER7_ARATH	8E-98	Protein ECERIFERUM 7
trEMBL	tr\|U5G3D9\|U5G3D9_POPTR	2E-108	Uncharacterized protein {ECO:0000313\|EMBL:ERP56849.1}
TAIR10	AT3G60500.3	3E-81	3'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	31980323	31987363	+
GWHAAZE00000001	mRNA	31980323	31987363	+
GWHAAZE00000001	exon	31980323	31980465	+
GWHAAZE00000001	exon	31981175	31981384	+
GWHAAZE00000001	exon	31982777	31982872	+
GWHAAZE00000001	exon	31982983	31983155	+
GWHAAZE00000001	exon	31984816	31984958	+
GWHAAZE00000001	exon	31986694	31986774	+
GWHAAZE00000001	exon	31987139	31987363	+
GWHAAZE00000001	CDS	31980323	31980465	+
GWHAAZE00000001	CDS	31981175	31981384	+
GWHAAZE00000001	CDS	31982777	31982872	+
GWHAAZE00000001	CDS	31982983	31983155	+
GWHAAZE00000001	CDS	31984816	31984958	+
GWHAAZE00000001	CDS	31986694	31986774	+
GWHAAZE00000001	CDS	31987139	31987363	+

Transcript Sequence
>GWHTAAZE001329 TATAAAATGGAGCAAAGGTTTGGCAATACCTTGCGGATGACAGTGAATGAGAAGAAATTCATAGAGACTGCATTACTGTCGAACCTAAGAGTTGATGGCCGAAGTCCTTTTGACTATAGGAGGATAACTATCAAGTTTGGTAGTGAAGATGGCTCATCCGAGGTGCAACTTGGTCAAACTCATGTAATTGGCTTTGTCACCGCCCAATTAGTTCAACCTTATCGAGACAGACCGAATGAGGGGACTCTTTCTATCTATACTGAGTTCTCCCCAATGGCTGATCCTTCATTTGAGGCAGGTCGCCCTGGAGAATCTGCTGTTGAGTTGGGACGCATAATTGACCGTGGTTTAAGGGAAAGCAGGGCTGTAGACACAGAATCACTTTGTGTTTCTGCAGGGAAGATTGTATGGTCCATTTGTATTGATCTGCACATTCTAGACAATGGGGGAAATCTTGTTGATGCTGCCAATATTGCTGCTTTGGCTGCTCTCTCAACGTTCCGGAGGCCAGAATGTACGCTAGGAGGAGGAGAAGATGGTCAAGAAGTGATTGTACATCCACCTGAGGTAAGTTTAATTGTCTATTTAACAGAAACTTATTTTGAGATAAAACTTGATCTTTATGTTTGCTGGATACTTGCCTCTATTGGTGCTTCCCCACGTAGCCTAACGGCATCCATCCCTTGTCCCCGACCGGGAGATAGGGACTATTTCATGCACAACTTCAACATCAGAAGCAGCTTCAGCCCTTCCAATCACCCGTTGGTGAGGGAGCCACTTCCTTTAATAATACACCATCTTCCCATTGCAGTAACCTTTGCATTTTTGGGTAAAGAGAATACCATGGTGATTGATCCAACCCACTATGAAGAGGCTGTAATGGGAGGAAGAATGACCGCTACACTTAATACAAGTGGTGATGTTTGTGCTATTCAAAAAGCCGGAGGAGAGGGTGTCCTCCCCAGTGTTATATTGCAGTGTTTGCGCATTGCTTCTGTTAAGGCTGCTGATGTCACCAGCAAGATAAAGAATGCTGTGAGTTCCTCCCTCATAATACTTTTTTTTTGGTAG

Network for GWHGAAZE001325

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	39	170	3.90E-21
PF03725.16	RNase_PH_C	266	332	5.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03678	RRP45, EXOSC9	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0000178	cellular_component	exosome (RNase complex)

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.353
	SRR3591706	second leaf	2.005
	SRR3591707	mature leaf	2.083
	SRR3591708	Shoot apex	6.131
	SRR3591709	Stem	3.646
	SRR3591710	White floral bud	2.236
	SRR3591711	White flower	2.555
	SRR3591712	Green floral bud	2.248
	SRR3591713	Yellow flower	1.280
SRP173429	SRR8316895	Juvenile bud stage	3.730
	SRR8316896	Juvenile bud stage	4.100
	SRR8316897	Juvenile bud stage	1.364
	SRR8316894	Third green stage	1.586
	SRR8316900	Third green stage	3.973
	SRR8316901	Third green stage	3.841
	SRR8316898	Complete white stage	0.919
	SRR8316899	Complete white stage	3.917
	SRR8316903	Complete white stage	2.168
	SRR8316902	Silver flowering stage	0.988
	SRR8316904	Silver flowering stage	1.413
	SRR8316905	Silver flowering stage	0.782
	SRR8316906	Gold flowering stage	2.255
	SRR8316907	Gold flowering stage	2.144
	SRR8316908	Gold flowering stage	1.674
SRP132670	SRR6706286	Control	7.121
	SRR6706287	Light intensity 50%	7.440
	SRR6706288	Light intensity 20%	6.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.827
	CNS0095593	Slightly white alabastrum(diploid) 2	2.161
	CNS0095594	Slightly white alabastrum(diploid) 3	2.174
	CNS0095595	Whole white alabastrum(diploid) 2	3.314
	CNS0095596	Whole white alabastrum(diploid) 3	3.784
	CNS0095597	Whole white alabastrum(diploid) 4	3.438
	CNS0095598	Silvery flower (diploied) 1	3.194
	CNS0095599	Silvery flower (diploied) 2	2.679
	CNS0095600	Silvery flower (diploied) 3	3.275
	CNS0095601	Golden flower (diploid) 1	2.752
	CNS0095602	Golden flower (diploid) 2	3.017
	CNS0095603	Golden flower (diploid) 3	2.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.762
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.979
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.491
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.639
	CNS0095610	Silvery flower (tetraploid) 1	3.133
	CNS0095611	Silvery flower (tetraploid) 2	3.477
	CNS0095612	Silvery flower (tetraploid) 3	2.290
	CNS0095613	Golden flower (tetraploid) 1	0.881
	CNS0095614	Golden flower (tetraploid) 2	1.936
	CNS0095615	Golden flower (tetraploid) 3	2.106
CRA001975	CRR073297	Stem 1	8.896
	CRR073298	Stem 2	6.492
	CRR073299	Stem 3	5.858
	CRR073300	Leaf 1	5.607
	CRR073301	Leaf 2	6.228
	CRR073302	Leaf 3	7.224
	CRR073303	Juvenile bud 1	3.654
	CRR073304	Juvenile bud 2	3.444
	CRR073305	Juvenile bud 3	4.259
	CRR073306	Third green 1	1.155
	CRR073307	Third green 2	1.136
	CRR073308	Third green 3	2.008
	CRR073309	Second white 1	0.605
	CRR073310	Second white 2	0.525
	CRR073311	Second white 3	0.633
	CRR073312	Silver flowering 1	0.817
	CRR073313	Silver flowering 2	1.103
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	2.154
	CRR073316	Gold flowering 2	3.167
	CRR073317	Gold flowering 3	3.100
	CRR073318	Tawny withering 1	6.460
	CRR073319	Tawny withering 2	3.654
	CRR073320	Tawny withering 3	2.292