Detail information of GWHGAAZE001288


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010271863.10PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Nelumbo nucifera]
Swissprottr|O81027|HMGCL_ARATH1E-178Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|A0A068UMV5|A0A068UMV5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_40 {ECO:0000313|EMBL:CDP09622.1}
TAIR10AT2G26800.18E-133Aldolase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene3029743830302650-
GWHAAZE00000001mRNA3029743830302650-
GWHAAZE00000001exon3029743830297686-
GWHAAZE00000001exon3029822630298341-
GWHAAZE00000001exon3029887930299015-
GWHAAZE00000001exon3030092530301088-
GWHAAZE00000001exon3030118530301265-
GWHAAZE00000001exon3030248330302650-
GWHAAZE00000001CDS3030248330302650-
GWHAAZE00000001CDS3030118530301265-
GWHAAZE00000001CDS3030092530301088-
GWHAAZE00000001CDS3029887930299015-
GWHAAZE00000001CDS3029822630298341-
GWHAAZE00000001CDS3029743830297686-
Transcript Sequence

Network for GWHGAAZE001288

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0007GO:0004419 hydroxymethylglutaryl-CoA lyase activity GOslim:molecular_function
GO:0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity GOslim:molecular_function
Transcription factor FAR1 family Transcription factor FAR1
map00072 Synthesis and degradation of ketone bodies
map00281 Geraniol degradation
map00540 Lipopolysaccharide biosynthesis
map00650 Butanoate metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00682.20HMGL-like52777.90E-54
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01640E4.1.3.4, HMGCL, hmgL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Geraniol degradationmap00281
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0004419molecular_functionhydroxymethylglutaryl-CoA lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.335
SRR3591706second leaf5.825
SRR3591707mature leaf7.338
SRR3591708Shoot apex9.352
SRR3591709Stem11.312
SRR3591710White floral bud10.180
SRR3591711White flower14.641
SRR3591712Green floral bud12.174
SRR3591713Yellow flower19.379
SRP173429 SRR8316895Juvenile bud stage 4.195
SRR8316896Juvenile bud stage 7.990
SRR8316897Juvenile bud stage 5.902
SRR8316894Third green stage 3.060
SRR8316900Third green stage 9.601
SRR8316901Third green stage 7.731
SRR8316898Complete white stage 3.922
SRR8316899Complete white stage 11.374
SRR8316903Complete white stage 5.251
SRR8316902Silver flowering stage2.945
SRR8316904Silver flowering stage4.365
SRR8316905Silver flowering stage2.043
SRR8316906Gold flowering stage 8.029
SRR8316907Gold flowering stage 10.464
SRR8316908Gold flowering stage 12.240
SRP132670SRR6706286Control3.877
SRR6706287Light intensity 50%3.816
SRR6706288Light intensity 20%4.527
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.817
CNS0095593Slightly white alabastrum(diploid) 28.912
CNS0095594Slightly white alabastrum(diploid) 37.677
CNS0095595Whole white alabastrum(diploid) 26.211
CNS0095596Whole white alabastrum(diploid) 37.826
CNS0095597Whole white alabastrum(diploid) 47.115
CNS0095598Silvery flower (diploied) 17.828
CNS0095599Silvery flower (diploied) 27.496
CNS0095600Silvery flower (diploied) 38.122
CNS0095601Golden flower (diploid) 16.748
CNS0095602Golden flower (diploid) 210.830
CNS0095603Golden flower (diploid) 38.257
CNS0095604Slightly white alabastrum(tetraploid) 115.542
CNS0095605Slightly white alabastrum(tetraploid) 215.112
CNS0095606Slightly white alabastrum(tetraploid) 312.457
CNS0095607Whole white alabastrum(tetraploid) 112.888
CNS0095608Whole white alabastrum(tetraploid) 215.410
CNS0095609Whole white alabastrum(tetraploid) 312.132
CNS0095610Silvery flower (tetraploid) 117.009
CNS0095611Silvery flower (tetraploid) 220.321
CNS0095612Silvery flower (tetraploid) 320.908
CNS0095613Golden flower (tetraploid) 117.271
CNS0095614Golden flower (tetraploid) 218.671
CNS0095615Golden flower (tetraploid) 320.115
CRA001975CRR073297Stem 17.863
CRR073298Stem 25.350
CRR073299Stem 35.559
CRR073300Leaf 16.027
CRR073301Leaf 24.003
CRR073302Leaf 36.106
CRR073303Juvenile bud 17.938
CRR073304Juvenile bud 26.491
CRR073305Juvenile bud 36.322
CRR073306Third green 15.120
CRR073307Third green 24.651
CRR073308Third green 33.631
CRR073309Second white 13.104
CRR073310Second white 26.897
CRR073311Second white 35.265
CRR073312Silver flowering 14.152
CRR073313Silver flowering 22.701
CRR073314Silver flowering 33.484
CRR073315Gold flowering 11.963
CRR073316Gold flowering 23.489
CRR073317Gold flowering 32.432
CRR073318Tawny withering 16.089
CRR073319Tawny withering 23.853
CRR073320Tawny withering 38.046