Gene detail

Detail information of GWHGAAZE001253

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010271863.1	0	PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Nelumbo nucifera]
Swissprot	tr\|O81027\|HMGCL_ARATH	2E-179	Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBL	tr\|V4RY63\|V4RY63_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR32717.1}
TAIR10	AT2G26800.1	2E-133	Aldolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	29331348	29335312	-
GWHAAZE00000001	mRNA	29331348	29335312	-
GWHAAZE00000001	exon	29331348	29331596	-
GWHAAZE00000001	exon	29332132	29332247	-
GWHAAZE00000001	exon	29332790	29332926	-
GWHAAZE00000001	exon	29333592	29333755	-
GWHAAZE00000001	exon	29333848	29333928	-
GWHAAZE00000001	exon	29335145	29335312	-
GWHAAZE00000001	CDS	29335145	29335312	-
GWHAAZE00000001	CDS	29333848	29333928	-
GWHAAZE00000001	CDS	29333592	29333755	-
GWHAAZE00000001	CDS	29332790	29332926	-
GWHAAZE00000001	CDS	29332132	29332247	-
GWHAAZE00000001	CDS	29331348	29331596	-

Transcript Sequence
>GWHTAAZE001255 ATGCCCAAGTATGTGAAGATAGTTGAAGTTGGTCCAAGGGACGGGTTACAAAATGAGAAGAATATTGTTCCTACAGCAGTGAAAATTGAGTTAATTCGGAGGCTGGTTTCTTCTGGATTATCTGTTGTTGAGGCTACAAGTTTCGTCTCACCAAAATGGGTGCCTCAGCTGGCAGATGGTAAAGATGTAATGGAAGCAGTTAGAAACTTGGAGGCTGCTAGATTGCCCGTTTTGGTACCTAATTTGAAAGGCTTTGAAGCAGCTGTTGCATCCGGTGCAAAAGAAGTAGCAATATTTGCATCAGCTTCGGAGTCCTTTTCCAAATCTAATATTAATTGTAGCATTGAAGAGAGTCTTACTCGTTATCAAACTGTTACTGAAGCTGCTCGAAAGCTCTCAATTCCTGTTCGCGGGTATGTATCATGCGTTGTTGGATGCCCAGTTGAAGGACCAGTTCCTCCATCAAAAGTTGCATTTGTGGCTAAAGAACTTTATGAAATGGGTTGCTCTGAAATTTCTCTCGGTGATACGATCGGCGTCGGAACACCTGGTACTGTTCTTCCTATGCTGGAATCAGTCATGGCTGTCGTCCCCACGGAGAAGCTTGCCGTTCATTTTCATGACACATATGGGCAATCTCTTTCAAACATTTTTGCATCCCTTCAGTTGGGAATTAGCACTGTGGATTCCTCAGTTGCGGGTCTAGGAGGGTGTCCATACGCGAAGGGAGCCTCCGGAAATGTGGCAACGGAGGATGTTGTGTACATGCTTAGCGGGCTCGGCATCGAAACCAATGTTGATATAAGAAAGCTCTTGTTGGCTGGGGAATTCATCAGCAAGCATTTGGGCCGCCCATCTGGTTCGAAGGTCGCCATTGCCCTGAGCCGCATTACAACTAATGCGTCAAAGCTATAA

Network for GWHGAAZE001253

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	5	277	1.60E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01640	E4.1.3.4, HMGCL, hmgL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Butanoate metabolism	map00650
		Synthesis and degradation of ketone bodies	map00072
		Valine, leucine and isoleucine degradation	map00280
		Geraniol degradation	map00281
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0004419	molecular_function	hydroxymethylglutaryl-CoA lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.548
	SRR3591706	second leaf	3.142
	SRR3591707	mature leaf	4.508
	SRR3591708	Shoot apex	4.506
	SRR3591709	Stem	7.545
	SRR3591710	White floral bud	2.343
	SRR3591711	White flower	5.159
	SRR3591712	Green floral bud	3.164
	SRR3591713	Yellow flower	5.123
SRP173429	SRR8316895	Juvenile bud stage	4.321
	SRR8316896	Juvenile bud stage	6.929
	SRR8316897	Juvenile bud stage	2.204
	SRR8316894	Third green stage	2.609
	SRR8316900	Third green stage	7.880
	SRR8316901	Third green stage	6.691
	SRR8316898	Complete white stage	3.901
	SRR8316899	Complete white stage	8.577
	SRR8316903	Complete white stage	6.184
	SRR8316902	Silver flowering stage	5.232
	SRR8316904	Silver flowering stage	6.403
	SRR8316905	Silver flowering stage	2.276
	SRR8316906	Gold flowering stage	9.347
	SRR8316907	Gold flowering stage	11.945
	SRR8316908	Gold flowering stage	6.875
SRP132670	SRR6706286	Control	2.751
	SRR6706287	Light intensity 50%	2.227
	SRR6706288	Light intensity 20%	2.465
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.091
	CNS0095593	Slightly white alabastrum(diploid) 2	6.637
	CNS0095594	Slightly white alabastrum(diploid) 3	7.501
	CNS0095595	Whole white alabastrum(diploid) 2	4.756
	CNS0095596	Whole white alabastrum(diploid) 3	6.222
	CNS0095597	Whole white alabastrum(diploid) 4	2.600
	CNS0095598	Silvery flower (diploied) 1	4.214
	CNS0095599	Silvery flower (diploied) 2	4.433
	CNS0095600	Silvery flower (diploied) 3	9.760
	CNS0095601	Golden flower (diploid) 1	3.079
	CNS0095602	Golden flower (diploid) 2	8.543
	CNS0095603	Golden flower (diploid) 3	6.378
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.543
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.559
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.499
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.559
	CNS0095610	Silvery flower (tetraploid) 1	5.576
	CNS0095611	Silvery flower (tetraploid) 2	5.589
	CNS0095612	Silvery flower (tetraploid) 3	6.019
	CNS0095613	Golden flower (tetraploid) 1	5.427
	CNS0095614	Golden flower (tetraploid) 2	5.675
	CNS0095615	Golden flower (tetraploid) 3	4.741
CRA001975	CRR073297	Stem 1	3.689
	CRR073298	Stem 2	3.252
	CRR073299	Stem 3	4.105
	CRR073300	Leaf 1	5.358
	CRR073301	Leaf 2	4.993
	CRR073302	Leaf 3	3.389
	CRR073303	Juvenile bud 1	5.767
	CRR073304	Juvenile bud 2	4.668
	CRR073305	Juvenile bud 3	4.174
	CRR073306	Third green 1	6.250
	CRR073307	Third green 2	4.207
	CRR073308	Third green 3	5.547
	CRR073309	Second white 1	4.325
	CRR073310	Second white 2	9.472
	CRR073311	Second white 3	6.329
	CRR073312	Silver flowering 1	3.294
	CRR073313	Silver flowering 2	1.646
	CRR073314	Silver flowering 3	1.866
	CRR073315	Gold flowering 1	2.897
	CRR073316	Gold flowering 2	4.182
	CRR073317	Gold flowering 3	1.142
	CRR073318	Tawny withering 1	2.749
	CRR073319	Tawny withering 2	3.374
	CRR073320	Tawny withering 3	2.938