Gene detail

Detail information of GWHGAAZE001224

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009767926.1	2.95612E-55	PREDICTED: NAC domain-containing protein 100-like [Nicotiana sylvestris]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	2E-53	NAC domain-containing protein 100
trEMBL	tr\|A5B814\|A5B814_VITVI	2E-55	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN69806.1}
TAIR10	AT5G61430.1	2E-44	NAC domain containing protein 100

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	28298261	28298742	+
GWHAAZE00000001	mRNA	28298261	28298742	+
GWHAAZE00000001	exon	28298261	28298425	+
GWHAAZE00000001	exon	28298530	28298742	+
GWHAAZE00000001	CDS	28298261	28298425	+
GWHAAZE00000001	CDS	28298530	28298742	+

Transcript Sequence
>GWHTAAZE001226 ATGGAGAACTTCAGTGGGATTGCTATAGAGGGGGATCATATTGAATTGCCTCTGGGATTTCGATTCCATCCTTTTGATGAGGAGCTGATTACTCATTATTTATCCAAGAAAGTTCTCGATATCAATTTCTCAGCTAGAGCTATTGGTGAGGTAGATATGAACAAGTGGAATGAAGGGAAGGTGAAAATAGGGGAGAAGGAGTGGTATTTTTTTTGTGTGAAGGATAAGAAATACCCTACAACAAGATTGAGGACAAACAGGGCCATTACTACTAGATACTGGAAAGTAATCGAAAAAGATAAGGAAATTTTCAAAGGAAAATCCTTAGTTGGGATGAAAGGAACCTTGGTTTTCTACAAGGGGAGAGCTCCAAAATGA

Network for GWHGAAZE001224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	17	121	9.30E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.893
	SRR3591706	second leaf	0.644
	SRR3591707	mature leaf	0.237
	SRR3591708	Shoot apex	0.308
	SRR3591709	Stem	0.705
	SRR3591710	White floral bud	2.912
	SRR3591711	White flower	2.854
	SRR3591712	Green floral bud	2.839
	SRR3591713	Yellow flower	1.343
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.421
	SRR8316900	Third green stage	0.141
	SRR8316901	Third green stage	0.222
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.820
	SRR8316903	Complete white stage	0.508
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.027
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.072
	SRR6706288	Light intensity 20%	0.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.345
	CNS0095593	Slightly white alabastrum(diploid) 2	0.071
	CNS0095594	Slightly white alabastrum(diploid) 3	0.696
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	1.115
	CNS0095599	Silvery flower (diploied) 2	1.696
	CNS0095600	Silvery flower (diploied) 3	0.240
	CNS0095601	Golden flower (diploid) 1	0.614
	CNS0095602	Golden flower (diploid) 2	0.333
	CNS0095603	Golden flower (diploid) 3	0.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.301
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.236
	CRR073300	Leaf 1	0.368
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.379
	CRR073303	Juvenile bud 1	0.248
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.064