Gene detail

Detail information of GWHGAAZE001209

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009630031.1	PREDICTED: calcium-dependent protein kinase 17-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FMP5\|CDPKH_ARATH	Calcium-dependent protein kinase 17
trEMBL	tr\|Q6KC53\|Q6KC53_NICPL	Calcium-dependent protein kinase 17 {ECO:0000313\|EMBL:CAG27840.1}
TAIR10	AT5G12180.1	calcium-dependent protein kinase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	27836003	27839476	-
GWHAAZE00000001	mRNA	27836003	27839476	-
GWHAAZE00000001	exon	27836003	27836101	-
GWHAAZE00000001	exon	27836225	27836324	-
GWHAAZE00000001	exon	27836428	27836555	-
GWHAAZE00000001	exon	27836979	27837146	-
GWHAAZE00000001	exon	27837416	27837531	-
GWHAAZE00000001	exon	27837684	27837875	-
GWHAAZE00000001	exon	27837953	27838096	-
GWHAAZE00000001	exon	27838777	27839476	-
GWHAAZE00000001	CDS	27838777	27839476	-
GWHAAZE00000001	CDS	27837953	27838096	-
GWHAAZE00000001	CDS	27837684	27837875	-
GWHAAZE00000001	CDS	27837416	27837531	-
GWHAAZE00000001	CDS	27836979	27837146	-
GWHAAZE00000001	CDS	27836428	27836555	-
GWHAAZE00000001	CDS	27836225	27836324	-
GWHAAZE00000001	CDS	27836003	27836101	-

Transcript Sequence
>GWHTAAZE001211 ATGGGGAACTGTTGTTCCCGCGGCAAAGATTCCGAAAATAATAATAACAACAGCAGCGATAACAACAACAATGATGACAAGGCGCAAAGCGTAAGACAAGATGCCCCAGTGAGCGAGAGCCCTCCCCATAACTCCCCCTCTCCCGGCCCCAAAAACAGCCCTCCCTCGGCCTCATCCAAGACCACCCCAATCGGGCCCGTTTTAGGCCGACCGATGGAGGATGTAAAGGCCACGTACACGATCGGAAAGGAGCTAGGTAGGGGACAATTCGGGGTCACTCATTTGTGCACCCACAAACAAACTGGGGACCAATACGCGTGCAAGACAATAGCCAAGAGGAAGCTGGTGAATAAGGAGGATATCGAGGATGTTAGGAGGGAAGTTCAAATAATGCACCATTTGACAGGGCAGCCTAATATTGTGGAACTTAAGGGCGCTTTTGAGGATAAGCATTCGGTGCATTTGGTGATGGAGTTGTGTGCCGGAGGAGAGCTTTTTGATAGGATCATTGCCAAGGGGCATTATACGGAGCGGGCAGCTGCTTCTTTGTTGAGGACGATTGTTCAGATCGTCCACACTTGTCATTCTATGGGTGTCATTCATAGGGATCTCAAGCCTGAAAACTTCCTTCTTTTGAATAAGGATGAGGATTCGCCTCTAAAAGCTACCGATTTCGGTCTATCAGTGTTCTACAAGCAAGGAGAAGTATTTAAAGATATCGTGGGAAGTGCGTATTATATTGCACCTGAAGTCTTGAAGAGAAAATACGGACCGGAGGTTGATATATGGAGCATTGGAGTTATGCTATACATTCTTCTTTCTGGTGTTCCTCCCTTTTGGGCAGACTTTTCGTATGAAATAACCAGAGAAATTGTGGAGACAGAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATAGATTTTACGAGTGATCCATGGCCGTCGATTTCACCTCAAGCGAAGGATCTTGTGAAGAAGATGCTGACTGTTGACCCCAAGCAGAGGATGACAGCACGTGAAGTTCTTAATCACCCATGGATTAAAGAAGATGGAGAAGCACCAGACACATTGCTTGACAATGCTGTTCTTGGCAGGCTCAAACAGTTCAGAGCAATGAACAAGTTCAAGAAAGTTGCTCTTCGGGTTATTGCGGGCTGCCTCTCGGAGGAAGAAATAATGGGATTGAAGCAAATGTTCAAAAGCATGGACTCCGACAACAGTGGCACCATAACACTCGAGGAGCTAAAGCAAGGACTAGCCAAACAAGGCACAAAGCTATCCGAATACGAAGTGAAACAGTTGATGGAAGCTGCTGATGCGGATGGAAATGGGACGATAGACTATGAAGAGTTCATTACGGCCACAATGCACATGAACAGAATGGACAGAGAAGAGCATCTTTACACTGCATTCCAATACTTTGATAAAGATAGTAGTGGGTTCATCACAAAAGAAGAACTAGAGCAAGCTCTCCGTGAGTTTGGCATGGACGACGGGAGGGACATAAAAGAAGTCATTGCTGAAGTTGACGCCGACAATGATGGTCGGATCAACTACGATGAGTTTGTGGCCATGATGAGGAAAGGTGACCCGGAAGTGACAAACCTGAAGAAACGGCGTGACTCATTTGTTGCATAA

Network for GWHGAAZE001209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	79	350	3.30E-76
PF13499.7	EF-hand_7	398	458	6.50E-13
PF13499.7	EF-hand_7	467	530	2.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.438
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.089
	SRR3591708	Shoot apex	0.139
	SRR3591709	Stem	1.984
	SRR3591710	White floral bud	304.596
	SRR3591711	White flower	15.794
	SRR3591712	Green floral bud	186.038
	SRR3591713	Yellow flower	10.253
SRP173429	SRR8316895	Juvenile bud stage	0.217
	SRR8316896	Juvenile bud stage	2.646
	SRR8316897	Juvenile bud stage	1.611
	SRR8316894	Third green stage	7.272
	SRR8316900	Third green stage	89.093
	SRR8316901	Third green stage	73.919
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.140
	SRR8316903	Complete white stage	0.279
	SRR8316902	Silver flowering stage	3.126
	SRR8316904	Silver flowering stage	6.108
	SRR8316905	Silver flowering stage	2.194
	SRR8316906	Gold flowering stage	1.127
	SRR8316907	Gold flowering stage	0.436
	SRR8316908	Gold flowering stage	0.280
SRP132670	SRR6706286	Control	108.169
	SRR6706287	Light intensity 50%	111.694
	SRR6706288	Light intensity 20%	97.593
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.415
	CNS0095593	Slightly white alabastrum(diploid) 2	40.106
	CNS0095594	Slightly white alabastrum(diploid) 3	28.694
	CNS0095595	Whole white alabastrum(diploid) 2	210.658
	CNS0095596	Whole white alabastrum(diploid) 3	234.340
	CNS0095597	Whole white alabastrum(diploid) 4	349.075
	CNS0095598	Silvery flower (diploied) 1	13.769
	CNS0095599	Silvery flower (diploied) 2	49.347
	CNS0095600	Silvery flower (diploied) 3	6.981
	CNS0095601	Golden flower (diploid) 1	13.587
	CNS0095602	Golden flower (diploid) 2	5.547
	CNS0095603	Golden flower (diploid) 3	5.245
	CNS0095604	Slightly white alabastrum(tetraploid) 1	129.675
	CNS0095605	Slightly white alabastrum(tetraploid) 2	130.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	365.297
	CNS0095608	Whole white alabastrum(tetraploid) 2	477.566
	CNS0095609	Whole white alabastrum(tetraploid) 3	204.838
	CNS0095610	Silvery flower (tetraploid) 1	7.281
	CNS0095611	Silvery flower (tetraploid) 2	27.717
	CNS0095612	Silvery flower (tetraploid) 3	86.184
	CNS0095613	Golden flower (tetraploid) 1	10.144
	CNS0095614	Golden flower (tetraploid) 2	2.419
	CNS0095615	Golden flower (tetraploid) 3	32.040
CRA001975	CRR073297	Stem 1	13.323
	CRR073298	Stem 2	8.765
	CRR073299	Stem 3	3.576
	CRR073300	Leaf 1	144.098
	CRR073301	Leaf 2	80.828
	CRR073302	Leaf 3	33.944
	CRR073303	Juvenile bud 1	128.104
	CRR073304	Juvenile bud 2	86.626
	CRR073305	Juvenile bud 3	11.641
	CRR073306	Third green 1	55.041
	CRR073307	Third green 2	57.102
	CRR073308	Third green 3	55.770
	CRR073309	Second white 1	1.332
	CRR073310	Second white 2	11.156
	CRR073311	Second white 3	11.163
	CRR073312	Silver flowering 1	45.785
	CRR073313	Silver flowering 2	49.458
	CRR073314	Silver flowering 3	30.196
	CRR073315	Gold flowering 1	37.669
	CRR073316	Gold flowering 2	15.172
	CRR073317	Gold flowering 3	6.510
	CRR073318	Tawny withering 1	62.071
	CRR073319	Tawny withering 2	58.154
	CRR073320	Tawny withering 3	49.889