Gene detail

Detail information of GWHGAAZE001192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645104.1	0	PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X4 [Vitis vinifera]
Swissprot	tr\|Q9SAK2\|KSB_ARATH	0	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|D7T123\|D7T123_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24150.3}
TAIR10	AT1G79460.1	3E-159	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	27400339	27408585	+
GWHAAZE00000001	mRNA	27400339	27408585	+
GWHAAZE00000001	exon	27400339	27400517	+
GWHAAZE00000001	exon	27403258	27403307	+
GWHAAZE00000001	exon	27403561	27403846	+
GWHAAZE00000001	exon	27403940	27404120	+
GWHAAZE00000001	exon	27404529	27404752	+
GWHAAZE00000001	exon	27404862	27404982	+
GWHAAZE00000001	exon	27405064	27405188	+
GWHAAZE00000001	exon	27405291	27405520	+
GWHAAZE00000001	exon	27405608	27405723	+
GWHAAZE00000001	exon	27405831	27405929	+
GWHAAZE00000001	exon	27406895	27406978	+
GWHAAZE00000001	exon	27407513	27407654	+
GWHAAZE00000001	exon	27407751	27407996	+
GWHAAZE00000001	exon	27408280	27408585	+
GWHAAZE00000001	five_prime_UTR	27400339	27400517	+
GWHAAZE00000001	five_prime_UTR	27403258	27403307	+
GWHAAZE00000001	five_prime_UTR	27403561	27403797	+
GWHAAZE00000001	CDS	27403798	27403846	+
GWHAAZE00000001	CDS	27403940	27404120	+
GWHAAZE00000001	CDS	27404529	27404752	+
GWHAAZE00000001	CDS	27404862	27404982	+
GWHAAZE00000001	CDS	27405064	27405188	+
GWHAAZE00000001	CDS	27405291	27405520	+
GWHAAZE00000001	CDS	27405608	27405723	+
GWHAAZE00000001	CDS	27405831	27405929	+
GWHAAZE00000001	CDS	27406895	27406978	+
GWHAAZE00000001	CDS	27407513	27407654	+
GWHAAZE00000001	CDS	27407751	27407996	+
GWHAAZE00000001	CDS	27408280	27408585	+

Transcript Sequence
>GWHTAAZE001194 TTATAGCGCGCAAGTTGATCCAGTTTATTCCAACAGTTAAAAATACAAGTCTGATGCGCTTAAATTGGTATAGTATTTTCAAACTGCTGGAAATATGTATCTCTCCCAGTATTACTACTGCCCCAGCCCCCTCCTTCGCAACAAACCCCCCCACTGGGTTTCCTATGCATCTCTCTCCGCTTAGTCCGATGCTGGAGTTAAAATATCGAGAGGGGCTAATACTGTCCTGAGCTCTGAAGGGATCAAAGAAAGAATTAGGAAATTATTTAATAGGGTTGAACTCTCTGTCTCTTAAGTATGACACGGCTTGGGTAGCTATGGTTCCTTCCCACATTATTCTCTAGCCCCATGTTTTCCGGAGTGTGTAGATTGGTTATTGGATAATCAGCTTGGCGATGGCTCATGGGGTCTACCTAATCACAGTCACCTATTACTCAAAGACACTCTTTCCTCTACATTAGCGTGTATGCTTGCACTAAAGCGATGGGGTGTTGGTGAATACCAGATAAACAAGGGTCTGCATTTTATCGAGTTGAATTTCCCTTCAGTTATTGATAAGAGTCAACATTCTCCAATTGGATTTGACATCATATTTCCTGGTATGCTTGATTATGCTCAAGATCTGGATTTGAAGCTCCCTTTAGAGCCAACAGTTTTAAATACATTGCTTCGAAATAGAGAGTTGGAGCTCAAAAGATCTTACAAAAGGCAGCCAGAGGAGAGGGAAGCCTACTTGGCATATGTATCAGAAGGATTAGGGAAGTTCCAAGATTGGGAAATGGTGATGAAGAAATATCAGAGGAAGAACGGGTCACTCTTCAACTCGCCCGCCACTACAGCTGCTGCTCTTTCTCATCATCTTCAAGATGCTGGCTGTCATAATTATATTCGCACGCTCTTAGACAAGTTTGGGAATGCAGTTCCAACAGTTTACCCTCTAGATATATACCTACGCCTCTGCATGATTGACAATCTCGAAAAGCTCGGAATAGATTGGCATTTTCGGGAAGAAATTCGATGCGTGTTAGATGAAACATACAGTAACATAACATTGTACCCAAAAAATAGCTGCTGGCTACAGGGGGATGAACAGATATTTACGGATGTCCCGACTTGTGCGATAGCGTTTCGGCTACTACGGATGAATGGATATGATGTTGCTTCAGATCCTTTAACTCAAATTGCCAAGGAAGAGAGTTATTTCAGTTCATTTGGTGGTGAACATTTGAAGGGCATAAGTGATGCACTTGAATTGTATAGGGCGTCGCAGTTGATTATATCTCCAGATGAATCTGCTTTGAGAAAGCAAAACTTACAGTCCAGTCATTTCCTCAAACAAACTTTAGCCGATGGTTCAGTTTGTTCAGATACTCTCTCTAGATATGTAGGGCAAGAGGTGGATGATGTTCTTAAGATTCCCTTCTGTGCAAGTTTAGAACGCATGGCCAACCGGAGAAATATAGAGAATTACAATGTAGACGGTACTTCAAGAATCCTAAAGACTTTGTATTGTTCATCTAATATTGGCAACAAAGATTTCCTAAAGCTGGCAGTAGAAGATTTTAACATCTGCCAGTCCATACACCGGGAAGAAATCGAACATATTGAGAGGTGGGTGATAGAGAACAGATTGGACAAGCTGAAGTTTGCGAGGCAGAGGGCAGCATATGCTTTTTTCTCTGCAGCAGCGACCATGTGGGATATAAATATAGAGTCTGATTGCTGTTCTGAGCATGTTCGGATAATTTTCTCAGCACTTTGCGGTGTAATTTGTGAGATTGAAGACCGAGCATTCATATATCAAGGACGCAGTGTGACTAGCCACATAGCTGAGATTTGGTTGGATTTGCTGAAGTCTATGTTGAGAGAAACTGAATGGTCTAGCGACAGATATGTGCCAAGCATGGATGAATATATGGAAAATGCATATGTATCGTTTGCCATAGGCCCAATTGTGCTCCCAACACTATATCTTGTTGGGCCGGAGCTCTCAGACGAGGCTGCTCGAAGTTCTGAAGCAAACAAGCTATTTAAGCTTATGAGCAATTGTGGGCGCCTTCTCAATGATATCCAAGGCTTCAAGAGGGAATCCGAGCAAGGTAAACTGAATGCCATATCGTTGAATGATTCATGGTGGTGGGAGTACTACGAAAGAAGAGGCTATAGAAGGCGTGAGGAGGTTCGGTGGAAGCAGAGGGAAGAAGTGCTGAGGCTAGTACTGAAGGAGAAGGGGAGTGTGGTACCGAGAGCTTGCAAGGAGTTGTTTTGGAAAATGACAAAAGTGGTGCATCAATTCTACCTCAAGGACGACGGTTTCACTTCCCAAGGACTGATGGCCTTCAAGGATATTATTCATGAACCCATTGCATTGCATGCCCTTGATGATTAG

Network for GWHGAAZE001192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	102	308	3.00E-38
PF03936.17	Terpene_synth_C	359	409	6.90E-13
PF03936.17	Terpene_synth_C	410	551	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.033
	SRR3591706	second leaf	1.545
	SRR3591707	mature leaf	0.748
	SRR3591708	Shoot apex	2.304
	SRR3591709	Stem	4.243
	SRR3591710	White floral bud	1.656
	SRR3591711	White flower	1.410
	SRR3591712	Green floral bud	3.022
	SRR3591713	Yellow flower	0.526
SRP173429	SRR8316895	Juvenile bud stage	2.936
	SRR8316896	Juvenile bud stage	7.267
	SRR8316897	Juvenile bud stage	2.347
	SRR8316894	Third green stage	3.068
	SRR8316900	Third green stage	10.888
	SRR8316901	Third green stage	9.240
	SRR8316898	Complete white stage	1.551
	SRR8316899	Complete white stage	11.359
	SRR8316903	Complete white stage	2.785
	SRR8316902	Silver flowering stage	0.470
	SRR8316904	Silver flowering stage	1.263
	SRR8316905	Silver flowering stage	0.471
	SRR8316906	Gold flowering stage	1.829
	SRR8316907	Gold flowering stage	1.920
	SRR8316908	Gold flowering stage	2.337
SRP132670	SRR6706286	Control	4.452
	SRR6706287	Light intensity 50%	4.853
	SRR6706288	Light intensity 20%	5.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.141
	CNS0095593	Slightly white alabastrum(diploid) 2	4.612
	CNS0095594	Slightly white alabastrum(diploid) 3	3.867
	CNS0095595	Whole white alabastrum(diploid) 2	3.846
	CNS0095596	Whole white alabastrum(diploid) 3	4.590
	CNS0095597	Whole white alabastrum(diploid) 4	2.462
	CNS0095598	Silvery flower (diploied) 1	2.769
	CNS0095599	Silvery flower (diploied) 2	2.840
	CNS0095600	Silvery flower (diploied) 3	3.659
	CNS0095601	Golden flower (diploid) 1	2.363
	CNS0095602	Golden flower (diploid) 2	3.421
	CNS0095603	Golden flower (diploid) 3	3.395
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.575
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.352
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.864
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.918
	CNS0095610	Silvery flower (tetraploid) 1	3.382
	CNS0095611	Silvery flower (tetraploid) 2	2.556
	CNS0095612	Silvery flower (tetraploid) 3	2.098
	CNS0095613	Golden flower (tetraploid) 1	0.395
	CNS0095614	Golden flower (tetraploid) 2	1.073
	CNS0095615	Golden flower (tetraploid) 3	0.483
CRA001975	CRR073297	Stem 1	3.066
	CRR073298	Stem 2	3.295
	CRR073299	Stem 3	3.100
	CRR073300	Leaf 1	5.439
	CRR073301	Leaf 2	5.545
	CRR073302	Leaf 3	4.499
	CRR073303	Juvenile bud 1	4.074
	CRR073304	Juvenile bud 2	2.279
	CRR073305	Juvenile bud 3	5.929
	CRR073306	Third green 1	0.619
	CRR073307	Third green 2	0.362
	CRR073308	Third green 3	0.340
	CRR073309	Second white 1	0.550
	CRR073310	Second white 2	0.948
	CRR073311	Second white 3	0.766
	CRR073312	Silver flowering 1	0.282
	CRR073313	Silver flowering 2	0.477
	CRR073314	Silver flowering 3	0.377
	CRR073315	Gold flowering 1	0.318
	CRR073316	Gold flowering 2	1.508
	CRR073317	Gold flowering 3	0.674
	CRR073318	Tawny withering 1	4.241
	CRR073319	Tawny withering 2	4.533
	CRR073320	Tawny withering 3	3.077