Gene detail

Detail information of GWHGAAZE001190

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEF32083.1	0	ent-kaurene synthase [Castanea mollissima]
Swissprot	tr\|Q39548\|KSB_CUCMA	0	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|F6KWJ1\|F6KWJ1_9ROSI	0	Ent-kaurene synthase {ECO:0000313\|EMBL:AEF32083.1}
TAIR10	AT1G79460.1	2E-164	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	27377496	27382378	+
GWHAAZE00000001	mRNA	27377496	27382378	+
GWHAAZE00000001	exon	27377496	27377546	+
GWHAAZE00000001	exon	27377956	27378061	+
GWHAAZE00000001	exon	27378184	27378364	+
GWHAAZE00000001	exon	27378715	27378938	+
GWHAAZE00000001	exon	27379037	27379157	+
GWHAAZE00000001	exon	27379239	27379363	+
GWHAAZE00000001	exon	27379467	27379696	+
GWHAAZE00000001	exon	27379783	27379898	+
GWHAAZE00000001	exon	27380009	27380107	+
GWHAAZE00000001	exon	27380955	27381170	+
GWHAAZE00000001	exon	27381577	27381718	+
GWHAAZE00000001	exon	27381815	27382060	+
GWHAAZE00000001	exon	27382361	27382378	+
GWHAAZE00000001	CDS	27377496	27377546	+
GWHAAZE00000001	CDS	27377956	27378061	+
GWHAAZE00000001	CDS	27378184	27378364	+
GWHAAZE00000001	CDS	27378715	27378938	+
GWHAAZE00000001	CDS	27379037	27379157	+
GWHAAZE00000001	CDS	27379239	27379363	+
GWHAAZE00000001	CDS	27379467	27379696	+
GWHAAZE00000001	CDS	27379783	27379898	+
GWHAAZE00000001	CDS	27380009	27380107	+
GWHAAZE00000001	CDS	27380955	27381170	+
GWHAAZE00000001	CDS	27381577	27381718	+
GWHAAZE00000001	CDS	27381815	27382060	+
GWHAAZE00000001	CDS	27382361	27382378	+

Transcript Sequence
>GWHTAAZE001192 GCTTCGTCCGATGCTGGAGTTAAAATATCGACAGAGGCTAATACTGTCCTGCTCGGCGATGGCTCATGGGGTTTGCCTAGTCAGAGTCACCTATTACTCAAAGACACTCTTTCCTCCACATTAGCGTGTATCCTTGCACTAAAGCGCTGGGGTGTTGGTCTGCATTTTATTGAGTTGAATTTCCCTTCAGCTATTGATAAGAGTCAACATTCTCCAATTGGATTTGACATCATATTTCCTGGTATGCTTGATTATGCTAAAGATCTGGATTTGAAGCTCCCTTTAGAACCAACAGTGTTGAATACATTGCTTCTAAATAGAGGGTTGGAGCTCAAGAGATCTTACAAAAGGCAACCAGAGGAGAGGGAAGCCTACTTGGCATATGTATCAGAAGGAATAGGGAAGTTCCAAGATTGGGAAATGGTGATGAAGAAATATCAGAGGAAGAACGGGTCACTCTTCAACTCGCCTGCCACTACAGCCGCTGCTCTTACTCATCATCTTCAAGATGCTGGCTGTCATAATTATATTCGTACACTCTTAGACAAGTTTGGGAATGCAGTTCCAACAGTTTACCCTCTAGCTATATACTTACGCCTCTGCATGATTGACAATCTTGAAAGGCTCGGAATAGATTGGCATTTTCGGGAGGAAATTCAATGCGTGTTAGATGAAACATACAGTAACTTAACATTATACCCAAAAAATAGCTGCTGGCTACAGGGGGATGAACAGATATTTACGGATGTCCTGACTTGTGCGATAGCGTTTCGGTTACTACGGATGAATGGATATGGTGTTGCTTCAGATCCTTTAACTCAAATTTCCAAGGAAGAGGGTTATTTCAGTTCATTTGGTGGTGGACATTTGAAGGGCATAAGTGATGCACTTGAATTGTATAGGGCGTCACAGTTGATTATATCTCCAGATGAATCTGCTTTGAGAAAGCAAAACTTACAGTCTAGTCATTTCCTCAAACAAACTTTATCCAATGGTTCAGTTTGTTCAGATACTCTCTCTAGATATGCAGGGCAAGAGGTGGATGATGTTCTTAAGATTCCCTTTTGTGCAAGTTTAGAACGCATGGCCAACCGGAGAGATATAGAAAATTACAATGTAGACAGTACTACAAGAGTCCTAAAGACTTTGTATTGGTCATCTAATATTGGCAACAAAGATTTCCTAAAGCTGGCAGTGGAAGATTTTAACTTCTGCCAGTCCGTACACCGTGAAGAAATCGAACATATTGAGAGGTGGGTGATAGAGAACAGATTGGACAAGCTGAAGTTTGCGAGACAGAAGGCAGCATATGCCTTTTTCTCTGCAGCAGCGACCATGTTCTCACCTGAACTATCACATGCGCGTATGTCATGGGCTAAAAATGCAGTGCTGACTTATGTGGTTGATGACTTTTTTGACATTGGCGGTTCTATAGAGGAACTGCTCAATCTCATTCACTTGGTTGAAAAGTGGGATATAAATATAGAATCTGATTGCTGTTCTGAGCATGTTCGGACACTTTTCTCAGTGCTTCGCGGTGTAATTTGTGAGATTGAAGACCGAGCATTCATATATCAAGGACGTAGTGTGACTAGCCACATAGCTGAGATTTGGTTGGATTCGCTGAAGTCGATGTTGAGAGAAACTGAATGGTCTAGAGACAGATATGTGCCAAGCATGGATGAGTATATGGAAAATGCATACGTATCATTTGCCGTAGGCCCAATTGTGCTCCCAACACTATATCTTGTTGGGCCGGAGCTCTCGGACGAGGCTGCTCGAAGTTCTGAAGTAAGCAAGCTATTTAAGCTTATGAGCAATTGTGGGCGCCTTCTCAATGATATCCAAAGCTTCAAGAGGAATCGAGCAAGGTAA

Network for GWHGAAZE001190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	138	333	3.20E-37
PF03936.17	Terpene_synth_C	395	623	5.70E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.270
	SRR3591706	second leaf	1.028
	SRR3591707	mature leaf	1.000
	SRR3591708	Shoot apex	1.877
	SRR3591709	Stem	3.642
	SRR3591710	White floral bud	1.024
	SRR3591711	White flower	0.489
	SRR3591712	Green floral bud	1.720
	SRR3591713	Yellow flower	0.443
SRP173429	SRR8316895	Juvenile bud stage	0.834
	SRR8316896	Juvenile bud stage	1.529
	SRR8316897	Juvenile bud stage	0.243
	SRR8316894	Third green stage	1.026
	SRR8316900	Third green stage	1.713
	SRR8316901	Third green stage	1.625
	SRR8316898	Complete white stage	0.246
	SRR8316899	Complete white stage	1.198
	SRR8316903	Complete white stage	0.190
	SRR8316902	Silver flowering stage	0.098
	SRR8316904	Silver flowering stage	0.054
	SRR8316905	Silver flowering stage	0.073
	SRR8316906	Gold flowering stage	0.352
	SRR8316907	Gold flowering stage	0.150
	SRR8316908	Gold flowering stage	0.123
SRP132670	SRR6706286	Control	0.668
	SRR6706287	Light intensity 50%	0.741
	SRR6706288	Light intensity 20%	0.963
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.052
	CNS0095593	Slightly white alabastrum(diploid) 2	2.728
	CNS0095594	Slightly white alabastrum(diploid) 3	2.833
	CNS0095595	Whole white alabastrum(diploid) 2	2.867
	CNS0095596	Whole white alabastrum(diploid) 3	2.432
	CNS0095597	Whole white alabastrum(diploid) 4	1.732
	CNS0095598	Silvery flower (diploied) 1	1.066
	CNS0095599	Silvery flower (diploied) 2	1.176
	CNS0095600	Silvery flower (diploied) 3	0.500
	CNS0095601	Golden flower (diploid) 1	0.587
	CNS0095602	Golden flower (diploid) 2	0.404
	CNS0095603	Golden flower (diploid) 3	0.216
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.204
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.074
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.414
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.093
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.164
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.293
	CNS0095610	Silvery flower (tetraploid) 1	0.122
	CNS0095611	Silvery flower (tetraploid) 2	0.060
	CNS0095612	Silvery flower (tetraploid) 3	0.037
	CNS0095613	Golden flower (tetraploid) 1	0.041
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.693
	CRR073298	Stem 2	0.751
	CRR073299	Stem 3	0.275
	CRR073300	Leaf 1	1.685
	CRR073301	Leaf 2	1.754
	CRR073302	Leaf 3	0.087
	CRR073303	Juvenile bud 1	0.182
	CRR073304	Juvenile bud 2	0.069
	CRR073305	Juvenile bud 3	0.958
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.052
	CRR073308	Third green 3	0.151
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.057
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.194
	CRR073315	Gold flowering 1	0.049
	CRR073316	Gold flowering 2	0.128
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.458
	CRR073319	Tawny withering 2	0.422
	CRR073320	Tawny withering 3	0.310