Detail information of GWHGAAZE001183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80681.12.08102E-85hypothetical protein VITISV_037734 [Vitis vinifera]
Swissprottr|O80678|UBA2B_ARATH4E-69UBP1-associated protein 2B
trEMBLtr|A5B1I9|A5B1I9_VITVI8E-86Putative uncharacterized protein {ECO:0000313|EMBL:CAN80681.1}
TAIR10AT2G41060.26E-36RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2720084827201609+
GWHAAZE00000001mRNA2720084827201609+
GWHAAZE00000001exon2720084827201222+
GWHAAZE00000001exon2720125327201609+
GWHAAZE00000001CDS2720084827201222+
GWHAAZE00000001CDS2720125327201609+
Transcript Sequence

Network for GWHGAAZE001183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_130995.90E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf159.763
SRR3591706second leaf121.785
SRR3591707mature leaf154.425
SRR3591708Shoot apex187.381
SRR3591709Stem187.725
SRR3591710White floral bud194.137
SRR3591711White flower192.629
SRR3591712Green floral bud200.437
SRR3591713Yellow flower135.140
SRP173429 SRR8316895Juvenile bud stage 80.365
SRR8316896Juvenile bud stage 97.050
SRR8316897Juvenile bud stage 48.302
SRR8316894Third green stage 41.369
SRR8316900Third green stage 122.535
SRR8316901Third green stage 123.700
SRR8316898Complete white stage 51.317
SRR8316899Complete white stage 183.776
SRR8316903Complete white stage 96.455
SRR8316902Silver flowering stage61.760
SRR8316904Silver flowering stage77.819
SRR8316905Silver flowering stage48.092
SRR8316906Gold flowering stage 134.428
SRR8316907Gold flowering stage 138.121
SRR8316908Gold flowering stage 137.277
SRP132670SRR6706286Control229.925
SRR6706287Light intensity 50%226.053
SRR6706288Light intensity 20%219.324
CNP0000432CNS0095592Slightly white alabastrum(diploid) 174.520
CNS0095593Slightly white alabastrum(diploid) 284.271
CNS0095594Slightly white alabastrum(diploid) 367.603
CNS0095595Whole white alabastrum(diploid) 281.477
CNS0095596Whole white alabastrum(diploid) 362.619
CNS0095597Whole white alabastrum(diploid) 480.613
CNS0095598Silvery flower (diploied) 190.416
CNS0095599Silvery flower (diploied) 279.937
CNS0095600Silvery flower (diploied) 3117.728
CNS0095601Golden flower (diploid) 195.907
CNS0095602Golden flower (diploid) 2119.279
CNS0095603Golden flower (diploid) 3119.407
CNS0095604Slightly white alabastrum(tetraploid) 187.369
CNS0095605Slightly white alabastrum(tetraploid) 273.900
CNS0095606Slightly white alabastrum(tetraploid) 3193.085
CNS0095607Whole white alabastrum(tetraploid) 149.479
CNS0095608Whole white alabastrum(tetraploid) 236.349
CNS0095609Whole white alabastrum(tetraploid) 3122.269
CNS0095610Silvery flower (tetraploid) 1144.881
CNS0095611Silvery flower (tetraploid) 2124.063
CNS0095612Silvery flower (tetraploid) 3111.512
CNS0095613Golden flower (tetraploid) 179.017
CNS0095614Golden flower (tetraploid) 2116.175
CNS0095615Golden flower (tetraploid) 3123.440
CRA001975CRR073297Stem 1106.732
CRR073298Stem 2107.378
CRR073299Stem 3109.776
CRR073300Leaf 1123.792
CRR073301Leaf 2119.331
CRR073302Leaf 395.748
CRR073303Juvenile bud 192.098
CRR073304Juvenile bud 2104.358
CRR073305Juvenile bud 3142.250
CRR073306Third green 1100.469
CRR073307Third green 280.028
CRR073308Third green 381.267
CRR073309Second white 171.572
CRR073310Second white 256.627
CRR073311Second white 353.025
CRR073312Silver flowering 164.773
CRR073313Silver flowering 273.863
CRR073314Silver flowering 365.309
CRR073315Gold flowering 166.176
CRR073316Gold flowering 279.596
CRR073317Gold flowering 387.385
CRR073318Tawny withering 1100.957
CRR073319Tawny withering 276.787
CRR073320Tawny withering 390.111