Gene detail

Detail information of GWHGAAZE001179

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088972.1	2.9304E-131	PREDICTED: probable receptor-like protein kinase At1g49730 [Sesamum indicum]
Swissprot	tr\|Q9FX99\|Y1497_ARATH	2E-53	Probable receptor-like protein kinase At1g49730 (Precursor)
trEMBL	tr\|D7TCN6\|D7TCN6_VITVI	2E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28259.3}
TAIR10	AT5G22050.2	2E-83	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	27002865	27007930	-
GWHAAZE00000001	mRNA	27002865	27007930	-
GWHAAZE00000001	exon	27002865	27003181	-
GWHAAZE00000001	exon	27004283	27004352	-
GWHAAZE00000001	exon	27004754	27004843	-
GWHAAZE00000001	exon	27005894	27005961	-
GWHAAZE00000001	exon	27006034	27006086	-
GWHAAZE00000001	exon	27007647	27007930	-
GWHAAZE00000001	CDS	27007647	27007930	-
GWHAAZE00000001	CDS	27006034	27006086	-
GWHAAZE00000001	CDS	27005894	27005961	-
GWHAAZE00000001	CDS	27004754	27004843	-
GWHAAZE00000001	CDS	27004283	27004352	-
GWHAAZE00000001	CDS	27002865	27003181	-

Transcript Sequence
>GWHTAAZE001181 ATGCCTGAATCTCTAACTTTTACTTCAGATCCAGTGCCTTTTGTGAAGCGTTTCTCACACAATGACATAAAGAGGGCCACCGATAGTTTCCGAAGAATCATCGATAGCTCTTCCCATGGCACTGTTTATAAAGCCAAATTTCAAAGCGGCCATCTTGCTTTGGTGAAAGAAGTTAGAGTTTTCAATGAAGAAGATAGTGTCTTCCACAGAGAAGTGCAACTCTTAGGGCGCTTGCATCACCGCCATGTTGTTGCACTTACTGGATTTTCCATAGGACAAAAGAGATTTCTAGTGTTTGAGAACATGGAAAACGGAAGCTTGAAGGAGCATCTGAATGATCCTCTGAAGACCCCCCTGGATTGGAGAACAAGGCTACAAATCGCCATTGACGTCGCAGCTGCACTAGAATATTTGCATTTCTTCTGCGACCCTCCAGTGTATCATGTCTCCATCAATTCAAGCACCATCATGTTAGACGAGAACTTTACTGCAAAGCTCTCCGCTGTTGGCCTTCTTGGTTCTTTTGGAAATCAAGTTACACTTCCACACTCTACGTGTTCTGAAGAATGTATGGGTCAAGTGCGCGGAAACATAATCTGTCAGCTCGGCTTGCTGATCCTTGAGCTAATAACAGGTCAATCCTCGGAGGAGGAGGGAGGGTCCGACTTAATCAAATGGGTCAAAGAATCCGGATTCCCAAGATCCATATATAACATGTTGGACCCAGATCTTGGAGATACTTATGATTCAACAGAGCTTAAAGGTCTATTAGCTGTAGCAAGATTGTGTATAAAGTCTGTAGATAAGCCAACTAATTTTACTCTTCAGATATATAGGTATCTACAGAAAAAGGTTGGCATTGCCCAACACACCTATTCATGA

Network for GWHGAAZE001179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	31	175	3.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_URK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.888
	SRR3591706	second leaf	26.942
	SRR3591707	mature leaf	14.971
	SRR3591708	Shoot apex	21.626
	SRR3591709	Stem	22.009
	SRR3591710	White floral bud	9.821
	SRR3591711	White flower	7.261
	SRR3591712	Green floral bud	21.234
	SRR3591713	Yellow flower	4.131
SRP173429	SRR8316895	Juvenile bud stage	9.517
	SRR8316896	Juvenile bud stage	11.851
	SRR8316897	Juvenile bud stage	9.011
	SRR8316894	Third green stage	8.499
	SRR8316900	Third green stage	21.212
	SRR8316901	Third green stage	21.756
	SRR8316898	Complete white stage	3.991
	SRR8316899	Complete white stage	29.733
	SRR8316903	Complete white stage	7.039
	SRR8316902	Silver flowering stage	1.962
	SRR8316904	Silver flowering stage	3.911
	SRR8316905	Silver flowering stage	1.227
	SRR8316906	Gold flowering stage	5.444
	SRR8316907	Gold flowering stage	4.115
	SRR8316908	Gold flowering stage	5.565
SRP132670	SRR6706286	Control	18.443
	SRR6706287	Light intensity 50%	19.460
	SRR6706288	Light intensity 20%	21.519
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.973
	CNS0095593	Slightly white alabastrum(diploid) 2	16.473
	CNS0095594	Slightly white alabastrum(diploid) 3	10.666
	CNS0095595	Whole white alabastrum(diploid) 2	13.521
	CNS0095596	Whole white alabastrum(diploid) 3	15.818
	CNS0095597	Whole white alabastrum(diploid) 4	14.406
	CNS0095598	Silvery flower (diploied) 1	10.092
	CNS0095599	Silvery flower (diploied) 2	9.013
	CNS0095600	Silvery flower (diploied) 3	10.789
	CNS0095601	Golden flower (diploid) 1	9.999
	CNS0095602	Golden flower (diploid) 2	9.128
	CNS0095603	Golden flower (diploid) 3	9.702
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.235
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.901
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.127
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.059
	CNS0095610	Silvery flower (tetraploid) 1	8.471
	CNS0095611	Silvery flower (tetraploid) 2	9.671
	CNS0095612	Silvery flower (tetraploid) 3	4.482
	CNS0095613	Golden flower (tetraploid) 1	4.623
	CNS0095614	Golden flower (tetraploid) 2	6.516
	CNS0095615	Golden flower (tetraploid) 3	1.720
CRA001975	CRR073297	Stem 1	18.645
	CRR073298	Stem 2	19.046
	CRR073299	Stem 3	17.238
	CRR073300	Leaf 1	25.347
	CRR073301	Leaf 2	24.927
	CRR073302	Leaf 3	23.694
	CRR073303	Juvenile bud 1	29.148
	CRR073304	Juvenile bud 2	24.507
	CRR073305	Juvenile bud 3	23.821
	CRR073306	Third green 1	1.729
	CRR073307	Third green 2	1.997
	CRR073308	Third green 3	3.220
	CRR073309	Second white 1	4.081
	CRR073310	Second white 2	2.653
	CRR073311	Second white 3	3.314
	CRR073312	Silver flowering 1	2.379
	CRR073313	Silver flowering 2	1.686
	CRR073314	Silver flowering 3	2.229
	CRR073315	Gold flowering 1	13.252
	CRR073316	Gold flowering 2	10.219
	CRR073317	Gold flowering 3	10.269
	CRR073318	Tawny withering 1	17.749
	CRR073319	Tawny withering 2	14.555
	CRR073320	Tawny withering 3	19.905