Gene detail

Detail information of GWHGAAZE001161

Functional Annotation

Database	Orthologs	Annotation
Nr	AGZ20100.1	serine/threonine-protein kinase [Camellia sinensis]
Swissprot	tr\|Q0WPH8\|NEK5_ARATH	Serine/threonine-protein kinase Nek5
trEMBL	tr\|U5U9V3\|U5U9V3_CAMSI	Serine/threonine-protein kinase {ECO:0000313\|EMBL:AGZ20100.1}
TAIR10	AT3G44200.1	NIMA (never in mitosis, gene A)-related 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	26518018	26528624	-
GWHAAZE00000001	mRNA	26518018	26528624	-
GWHAAZE00000001	exon	26518018	26519448	-
GWHAAZE00000001	exon	26520870	26521478	-
GWHAAZE00000001	exon	26521576	26521627	-
GWHAAZE00000001	exon	26522654	26522695	-
GWHAAZE00000001	exon	26522776	26522849	-
GWHAAZE00000001	exon	26523264	26523313	-
GWHAAZE00000001	exon	26523590	26523671	-
GWHAAZE00000001	exon	26525885	26525934	-
GWHAAZE00000001	exon	26526022	26526064	-
GWHAAZE00000001	exon	26526160	26526240	-
GWHAAZE00000001	exon	26526459	26526504	-
GWHAAZE00000001	exon	26526605	26526651	-
GWHAAZE00000001	exon	26526759	26526824	-
GWHAAZE00000001	exon	26527749	26527815	-
GWHAAZE00000001	exon	26528141	26528624	-
GWHAAZE00000001	five_prime_UTR	26528239	26528624	-
GWHAAZE00000001	CDS	26528141	26528238	-
GWHAAZE00000001	CDS	26527749	26527815	-
GWHAAZE00000001	CDS	26526759	26526824	-
GWHAAZE00000001	CDS	26526605	26526651	-
GWHAAZE00000001	CDS	26526459	26526504	-
GWHAAZE00000001	CDS	26526160	26526240	-
GWHAAZE00000001	CDS	26526022	26526064	-
GWHAAZE00000001	CDS	26525885	26525934	-
GWHAAZE00000001	CDS	26523590	26523671	-
GWHAAZE00000001	CDS	26523264	26523313	-
GWHAAZE00000001	CDS	26522776	26522849	-
GWHAAZE00000001	CDS	26522654	26522695	-
GWHAAZE00000001	CDS	26521576	26521627	-
GWHAAZE00000001	CDS	26520870	26521478	-
GWHAAZE00000001	CDS	26518018	26519448	-

Transcript Sequence
>GWHTAAZE001163 GGGGGGGGATCAAATCTGTACCCAAAAGAGAAGAAATAGACCAGAATCGAGGTTTTTTTTTTTGGCCATTACTGATTTGATTGCTTTATTTGTTAAACAATGTACGTTTTCTCGATTTTCGGAAAGGCAAATTGGATTCGAATCTGATTGAGGTGATTAAAGTGCGCGGTGAAGAAATTCAGTGAAGAAAGTGGATTAGAGTTTTCGTATATATTGGCTTTGATCTATAAATGATTCGAAGAAGAAGCAAGGAAATCTAAGAATTTGTCAAAATTAGGGCATTGTGGATTGTAATTTGAGTGGAGAATCATGTGAGGATAATGTAATTTGAAGTTTTCATTGTATTTTTGGTAACTGTGATGCCAAAGCTATAAATCGATAAGTTAATGGAGTCTAGAATGGATCAGTATGAGATCATGGAGCAGATTGGCCGGGGAGCTTTTGGAGCCGCCATTCTCGTCAATCACAAGTCTGAAAGAAAAAAGTACGTACTTAAGAAGATTCGTCTTGCTCGACAGACTGAACGTTGCCGGAGATCTGCTCACCAAGAGATGGCTTTGATTGCGCGAATTCAACATCCGTACATTGTTGAATTTAAGGAAGCATGGGTGGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATATTGTGAAGGCGGAGACATAGCTGAGTTGATGAAGAAAATGAATGGACAATATTTTCCAGAGGAGAAACTTTGCAAGTGGTTCACTCAAATACTATTGGCAGTTGAATATCTTCATTCAAATTATGTTCTACATCGGGACCTGAAGTGTTCCAACATATTTCTTACGAAAGATCAAGATGTTCGCCTAGGGGATTTTGGACTTGCTAAAACTTTGAAGGCAGATGACTTGGCATCTTCGGTAGTTGGAACTCCCAATTACATGTGCCCTGAACTTCTTGCTGACATCCCTTATGGTTTCAAATCTGACATATGGTCCCTAGGTTGCTGCATGTATGAGATGGCTGCTCATCGCCCTGCATTTAAAGCTTTTGATATGGCAGGATTGATAAGTAAGATAAACCGATCCTCCATTGGCCCTTTGCCACCCTGTTACTCTCCATCCTTACTTACCCAGTTGATTCCAGTCATAGCTTTGCTTAGTCCCAGGAAAACACTGATCAAGGGCATGCTAAGAAAGAACCCAGAACATCGACCCAATGCATCTGAAATCCTAAAACACCCATACTTGCAGCCTTATGTGGACCAATACCGCCTGTCTTTTAATCCTCCTATTGCCTGTTCTCCCGGGAAATCCCGTCGTGATAGTAGGAAGAGTCTAGCTGAAAGCCAAAGTAGTAACAGTTCTTGCAGTGACAGAGATAGTTTGATGTCGAGTGAGAAAAACATTCAGGCCGTTGCTTGCAATTGTGACAAAAGAACCACTGATACAGATTTGGCTTCTATTGACGATGATGAGATTGGTTGTGAGCAGCCAAGTGATGAACGTTGCACTGAGACGTGCAAACCCTTCAATGATGATCAGAGACACAATAGCGAAACTAAGCCACCGAAAGCCATAAAGAATATTATGCTGGCTCTGAAAGAAGGAAAGACCCGAGAAAATAGTTCGCCAATGAGAAGCAACCGCACGAAAGCAGGGGGTGTTTGTACTCAGAGAAATAACATAGAAGCATTGCCCAAGGTTCCCAAGTTAGGCGCAGTTGCCCCTGGTTTGAAGTCTAATGTCGATTCACCACCCTCTGCACCGTCAAAGACCAGCTTTGATTCTGGAAAACGGGGTCAGGGTCTGCATTCTTTGAAGCATCAGTTGCCTGTTATTGACTCCCCTCCAAAGACTAAACCTAGACACGAGGGGATCCCTCCCTCTGTTCCTACAAGGTTTATTGCCGAAGATGGAGTTCCTGCAAAGCCAAGACAAACAACACCTCCTAATCTGGTCCGACGGCCATCATTTCCCGCCCGGATGAAACAAATAGGGGTTGACAGTACCCCAGATCACAAGTGCAATAATGTAAAAGTCCCAAGTGAGACCAACCACAATGCTGAAAGGATGAAGACTCCTGATAAAGTGCAAAAGCATATTTCACCCGTTTCAAGGGAGATTGTACACCGCTCTAAAGAGGCTTTTCTGGGACCCTCCAAAGGAATGCAAACAGAAAGCTGCAATTCAGTCTCATCATCCACCTCAATCCAAGGATTTGATCTTTCTGATGATGCAACAACTACTCATGATAACTTGACCGAAACTGAAACAATGCTTCCCAATCTCGAGGGAGTCGCCCAAACTGAACGTTTAGGGTCGGGTCCACCCAGCTGCTCGCCCCCATCCTCAATGCAGTATGAGAGGCCTGAAAATATACCCAGAGAAGAATCTGTATTGTCCCCCACTAGGCCCACTGGGCCCCACTTTGTCGGTCCGATTAAGAATGGTGCTTCTGGTAATGTGAAAGTGAGTTCAAGTTCAACTGAAGTATTAGATGTCCCACTCCCAACTTCAAAAGAAATGTCTGTTGGCAAAGACGATGGCCCAATGAACGGGCCTAGTAGTAGGCCAAGTGAAGTGTCCCAGTCGAGCCTCACTTCTATATCAAACGGCGATGACAAGTTCACCGTAAAAGAACTACTCTCGTCAGTTGCAGATAGCACTTGTTCCCCTGTCACTCCTGTTTCTACTAGCCAAAAGAATTTTCTGTCTGACAAGGCAACAGTTATGCACAGTCCAAAAGTTGAAAATACCCCTCAGCTCCCGCCAGCTTTTGATGACATCATTCATGTTATTCGACATAGTAGTTTCCGAGTTGGGAGTGAGCAGCAAGTGATAGAAACTGTAGATGTTGGGCAGCAGCTAATCAATGTAGTAAGGGACGAGCTAGAGAACAATAAAAACATAGCCACCCCAGATAATCTTGGTACTAAGGAAATGGATATAAGAAACCCCACCACTCCGATTCCGCAAGTAGATTCTTCAGAGTTGGCAAAACCCAATTCTCCTTCAACTCCTCAGGAGGAAACACCAACGAAGGAAATTTTAGATGTCAAGTCCTTCAGTCAGAGGGCAGAGGCACTCGAAGGGCTGTTGGAATTGTCGGCTGATTTGCTTCAGCAAAATAGGCTTGAGGAGCTTTCCGTTGTTTTAAGACCTTTTGGAAAAGATAAGGTCTCCCCAAGGGAAACAGCTATCTGGTTGGCAAAGAGTCTTAAAGGAATGATGCTGGATGATTCTGGACGGAGTTCTTGA

Network for GWHGAAZE001161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	8	276	2.80E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	NEK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.131
	SRR3591706	second leaf	12.839
	SRR3591707	mature leaf	7.415
	SRR3591708	Shoot apex	21.314
	SRR3591709	Stem	22.109
	SRR3591710	White floral bud	18.471
	SRR3591711	White flower	9.398
	SRR3591712	Green floral bud	25.793
	SRR3591713	Yellow flower	4.927
SRP173429	SRR8316895	Juvenile bud stage	17.162
	SRR8316896	Juvenile bud stage	22.093
	SRR8316897	Juvenile bud stage	11.241
	SRR8316894	Third green stage	9.326
	SRR8316900	Third green stage	28.264
	SRR8316901	Third green stage	26.915
	SRR8316898	Complete white stage	4.920
	SRR8316899	Complete white stage	26.643
	SRR8316903	Complete white stage	10.422
	SRR8316902	Silver flowering stage	1.610
	SRR8316904	Silver flowering stage	3.998
	SRR8316905	Silver flowering stage	1.345
	SRR8316906	Gold flowering stage	3.524
	SRR8316907	Gold flowering stage	3.794
	SRR8316908	Gold flowering stage	3.469
SRP132670	SRR6706286	Control	26.132
	SRR6706287	Light intensity 50%	27.967
	SRR6706288	Light intensity 20%	28.995
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.992
	CNS0095593	Slightly white alabastrum(diploid) 2	13.665
	CNS0095594	Slightly white alabastrum(diploid) 3	11.702
	CNS0095595	Whole white alabastrum(diploid) 2	10.689
	CNS0095596	Whole white alabastrum(diploid) 3	10.520
	CNS0095597	Whole white alabastrum(diploid) 4	10.126
	CNS0095598	Silvery flower (diploied) 1	11.777
	CNS0095599	Silvery flower (diploied) 2	10.404
	CNS0095600	Silvery flower (diploied) 3	8.379
	CNS0095601	Golden flower (diploid) 1	7.366
	CNS0095602	Golden flower (diploid) 2	8.876
	CNS0095603	Golden flower (diploid) 3	9.512
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.402
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.372
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.754
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.340
	CNS0095610	Silvery flower (tetraploid) 1	6.564
	CNS0095611	Silvery flower (tetraploid) 2	8.015
	CNS0095612	Silvery flower (tetraploid) 3	9.190
	CNS0095613	Golden flower (tetraploid) 1	2.344
	CNS0095614	Golden flower (tetraploid) 2	6.147
	CNS0095615	Golden flower (tetraploid) 3	2.970
CRA001975	CRR073297	Stem 1	42.763
	CRR073298	Stem 2	39.876
	CRR073299	Stem 3	31.813
	CRR073300	Leaf 1	45.175
	CRR073301	Leaf 2	44.534
	CRR073302	Leaf 3	29.535
	CRR073303	Juvenile bud 1	28.173
	CRR073304	Juvenile bud 2	24.858
	CRR073305	Juvenile bud 3	40.841
	CRR073306	Third green 1	6.005
	CRR073307	Third green 2	7.276
	CRR073308	Third green 3	9.109
	CRR073309	Second white 1	0.828
	CRR073310	Second white 2	1.443
	CRR073311	Second white 3	1.917
	CRR073312	Silver flowering 1	1.300
	CRR073313	Silver flowering 2	1.349
	CRR073314	Silver flowering 3	1.483
	CRR073315	Gold flowering 1	5.797
	CRR073316	Gold flowering 2	11.029
	CRR073317	Gold flowering 3	5.891
	CRR073318	Tawny withering 1	21.408
	CRR073319	Tawny withering 2	10.201
	CRR073320	Tawny withering 3	20.591