Gene detail

Detail information of GWHGAAZE001141

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG30774.1	1.2802E-130	NAC domain-containing 89 -like protein [Gossypium arboreum]
Swissprot	tr\|Q9XIN7\|NTL8_ARATH	3E-87	Protein NTM1-like 8 {ECO:0000303\|PubMed:19704545}
trEMBL	tr\|W6JBA9\|W6JBA9_GOSHI	1E-130	NAC domain protein NAC62 {ECO:0000313\|EMBL:AHJ79203.1}
TAIR10	AT3G44290.1	3E-74	NAC domain containing protein 60

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	25942659	25950372	+
GWHAAZE00000001	mRNA	25942659	25950372	+
GWHAAZE00000001	exon	25942659	25942851	+
GWHAAZE00000001	exon	25944597	25944850	+
GWHAAZE00000001	exon	25949149	25949424	+
GWHAAZE00000001	exon	25949880	25950372	+
GWHAAZE00000001	CDS	25942659	25942851	+
GWHAAZE00000001	CDS	25944597	25944850	+
GWHAAZE00000001	CDS	25949149	25949424	+
GWHAAZE00000001	CDS	25949880	25950284	+
GWHAAZE00000001	three_prime_UTR	25950285	25950372	+

Transcript Sequence
>GWHTAAZE001143 ATGTCTGAGATGGGGGAGCAGTCAATGTCGAGGCAGATGCAGTTATCAATGATGTTCCCGGGGTTCAAATTCTCTCCGACCGACGAAGAACTCATTTCTTATTACTTGAAGAAGAAGATCGAAGGCTCTGACAGTGTCGTTGAAGTGATTCCGGAGCTAGACCTTTGTCAATTCGAGCCCTGGGATTTACCAGATAAATCTGTGATTCAATCGGATAGTGAGTGGTTCTTTTTTTCTGCTCGAGGAAGAAAGTACCCGAATGGGTTGCAGAGCAAGAGGGCAACTGAATCTGGATACTGGAAAGCTACTGGGAAAGAACGAAACGTGAAGTCGGGTTCGAATGTGATTGGCACTAAGAGGACATTGGTTTTCCATAGAGGCCGAGCACCCAAGGGAGAGAGGACGGAATGGATAATGCATGAATATTGTATGAGTGGGAACTCTCAGGATTCCCTTGTTGTTTGCCGCCTTCGTAAAAATATTGAGTTTCGCTTAAATGACAATCCAAGAAGAGCAGCTCAGAATCGACCTGGTGATAATGATAATATTCGTTCAGGTGAAGATGATATTGAACAAACTGGCGTATTTGACAGGGACAAGGCACTTGATGGCTGTCATAGTAGTTACAATTCTCAATCACTCGAGCCTACAGATTCTGGATCTGAGTCCAATCAAAATATAGCAGATCAGCTTCCGCATAATGCTGTTTCCAGTCAGCAAAAGGATTTTGACAGTGAAGAAGATTGTTTTGCTGAAATAATGAATGATGACATTATCAATCTTGACGAGTCTTCTTTATCAACAATTCCTCGTCTTCAACAAGCCGATATAAATTCAGAGCAAGCAATACACGATATAAATTCAGAGCAGGCAATACAAGGGGATGCGTCGAATGTGGTTCCTGTCCAGGGCACAGCAAACAGAAGAATCAGGTTGAGAAGGAATAATTCAAAATTTAGTCGCTCGTCGTCGGAAGGATCTGAAGTTGAGGATGGGGCTTGTCCCAGCAGTGCACATGTACAAACGCCATCTCGCAGGGTAGTTAAATGGCAGTTTATCGTTACCATTTCGCTTATTCTGACTTTGTTGGCCTTGTTTTTTATTATGCTTGGATTGGTATTAGCTTAATAGCTTTGAAAGTTGTTATACACCAACACTAATATGCCTATATATATGATTATTGTATAGAGTCGTCCTAACTTTTACTAGTTTTGTC

Network for GWHGAAZE001141

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	20	143	1.20E-34

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.672
	SRR3591706	second leaf	0.650
	SRR3591707	mature leaf	0.580
	SRR3591708	Shoot apex	2.801
	SRR3591709	Stem	2.043
	SRR3591710	White floral bud	0.486
	SRR3591711	White flower	1.497
	SRR3591712	Green floral bud	1.022
	SRR3591713	Yellow flower	1.297
SRP173429	SRR8316895	Juvenile bud stage	2.046
	SRR8316896	Juvenile bud stage	2.926
	SRR8316897	Juvenile bud stage	0.814
	SRR8316894	Third green stage	0.462
	SRR8316900	Third green stage	0.768
	SRR8316901	Third green stage	0.581
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.424
	SRR8316903	Complete white stage	0.126
	SRR8316902	Silver flowering stage	0.215
	SRR8316904	Silver flowering stage	0.400
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.056
	SRR8316907	Gold flowering stage	0.116
	SRR8316908	Gold flowering stage	0.083
SRP132670	SRR6706286	Control	0.461
	SRR6706287	Light intensity 50%	0.283
	SRR6706288	Light intensity 20%	0.363
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.924
	CNS0095593	Slightly white alabastrum(diploid) 2	1.978
	CNS0095594	Slightly white alabastrum(diploid) 3	2.747
	CNS0095595	Whole white alabastrum(diploid) 2	1.047
	CNS0095596	Whole white alabastrum(diploid) 3	0.342
	CNS0095597	Whole white alabastrum(diploid) 4	0.325
	CNS0095598	Silvery flower (diploied) 1	2.212
	CNS0095599	Silvery flower (diploied) 2	1.676
	CNS0095600	Silvery flower (diploied) 3	0.832
	CNS0095601	Golden flower (diploid) 1	1.263
	CNS0095602	Golden flower (diploid) 2	0.428
	CNS0095603	Golden flower (diploid) 3	0.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.887
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.066
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.575
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.231
	CNS0095610	Silvery flower (tetraploid) 1	1.024
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.678
	CNS0095613	Golden flower (tetraploid) 1	0.095
	CNS0095614	Golden flower (tetraploid) 2	0.044
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.766
	CRR073298	Stem 2	1.645
	CRR073299	Stem 3	1.390
	CRR073300	Leaf 1	0.637
	CRR073301	Leaf 2	1.090
	CRR073302	Leaf 3	0.859
	CRR073303	Juvenile bud 1	0.146
	CRR073304	Juvenile bud 2	0.145
	CRR073305	Juvenile bud 3	0.148
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.087
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.365
	CRR073316	Gold flowering 2	0.856
	CRR073317	Gold flowering 3	0.107
	CRR073318	Tawny withering 1	1.499
	CRR073319	Tawny withering 2	0.433
	CRR073320	Tawny withering 3	2.130