Detail information of GWHGAAZE001112


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80681.17.4628E-49hypothetical protein VITISV_037734 [Vitis vinifera]
Swissprottr|O80678|UBA2B_ARATH7E-32UBP1-associated protein 2B
trEMBLtr|A5B1I9|A5B1I9_VITVI3E-49Putative uncharacterized protein {ECO:0000313|EMBL:CAN80681.1}
TAIR10AT3G56860.52E-12UBP1-associated protein 2A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2527763625278199-
GWHAAZE00000001mRNA2527763625278199-
GWHAAZE00000001exon2527802325278199-
GWHAAZE00000001exon2527763625277992-
GWHAAZE00000001CDS2527802325278199-
GWHAAZE00000001CDS2527763625277992-
Transcript Sequence

Network for GWHGAAZE001112

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.185
SRR3591706second leaf51.284
SRR3591707mature leaf67.222
SRR3591708Shoot apex83.813
SRR3591709Stem86.333
SRR3591710White floral bud85.857
SRR3591711White flower79.580
SRR3591712Green floral bud87.954
SRR3591713Yellow flower54.283
SRP173429 SRR8316895Juvenile bud stage 39.959
SRR8316896Juvenile bud stage 48.619
SRR8316897Juvenile bud stage 34.742
SRR8316894Third green stage 19.364
SRR8316900Third green stage 60.013
SRR8316901Third green stage 66.072
SRR8316898Complete white stage 27.691
SRR8316899Complete white stage 82.275
SRR8316903Complete white stage 39.314
SRR8316902Silver flowering stage32.525
SRR8316904Silver flowering stage36.062
SRR8316905Silver flowering stage22.553
SRR8316906Gold flowering stage 67.715
SRR8316907Gold flowering stage 64.176
SRR8316908Gold flowering stage 93.932
SRP132670SRR6706286Control80.587
SRR6706287Light intensity 50%85.443
SRR6706288Light intensity 20%85.680
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.440
CNS0095593Slightly white alabastrum(diploid) 256.559
CNS0095594Slightly white alabastrum(diploid) 340.271
CNS0095595Whole white alabastrum(diploid) 247.604
CNS0095596Whole white alabastrum(diploid) 335.295
CNS0095597Whole white alabastrum(diploid) 441.474
CNS0095598Silvery flower (diploied) 155.865
CNS0095599Silvery flower (diploied) 243.023
CNS0095600Silvery flower (diploied) 349.060
CNS0095601Golden flower (diploid) 151.167
CNS0095602Golden flower (diploid) 256.179
CNS0095603Golden flower (diploid) 357.381
CNS0095604Slightly white alabastrum(tetraploid) 157.981
CNS0095605Slightly white alabastrum(tetraploid) 253.053
CNS0095606Slightly white alabastrum(tetraploid) 3120.464
CNS0095607Whole white alabastrum(tetraploid) 136.103
CNS0095608Whole white alabastrum(tetraploid) 230.990
CNS0095609Whole white alabastrum(tetraploid) 389.026
CNS0095610Silvery flower (tetraploid) 188.735
CNS0095611Silvery flower (tetraploid) 264.315
CNS0095612Silvery flower (tetraploid) 359.960
CNS0095613Golden flower (tetraploid) 159.017
CNS0095614Golden flower (tetraploid) 280.027
CNS0095615Golden flower (tetraploid) 369.272
CRA001975CRR073297Stem 144.063
CRR073298Stem 244.422
CRR073299Stem 343.745
CRR073300Leaf 150.738
CRR073301Leaf 247.280
CRR073302Leaf 340.934
CRR073303Juvenile bud 139.417
CRR073304Juvenile bud 239.554
CRR073305Juvenile bud 358.058
CRR073306Third green 142.876
CRR073307Third green 232.572
CRR073308Third green 335.331
CRR073309Second white 125.892
CRR073310Second white 221.873
CRR073311Second white 312.864
CRR073312Silver flowering 117.994
CRR073313Silver flowering 226.889
CRR073314Silver flowering 319.385
CRR073315Gold flowering 121.678
CRR073316Gold flowering 227.225
CRR073317Gold flowering 325.715
CRR073318Tawny withering 134.801
CRR073319Tawny withering 227.686
CRR073320Tawny withering 326.044