Gene detail

Detail information of GWHGAAZE001093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010313337.1	0	PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase D6PK [Solanum lycopersicum]
Swissprot	tr\|Q39183\|D6KL2_ARATH	2E-146	Serine/threonine-protein kinase D6PKL2
trEMBL	tr\|M1CIP3\|M1CIP3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068252}
TAIR10	AT3G44610.1	8E-162	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	24717803	24723182	-
GWHAAZE00000001	mRNA	24717803	24723182	-
GWHAAZE00000001	exon	24722629	24723182	-
GWHAAZE00000001	exon	24717803	24718601	-
GWHAAZE00000001	CDS	24722629	24723182	-
GWHAAZE00000001	CDS	24717803	24718601	-

Transcript Sequence
>GWHTAAZE001095 ATGGAGCCATGGTCTATGGACGACCTGACCGACGACCTCCAAAGCATGAGCTTCAACTCCGCCACCACCGCCGCCACCGACATCCATCGCAGCACCTCCTCCGGCTCCGAAACCACCACCTGGAGAACCTCCTCCTCCACCCACTTCACCACCACCAAGCCCCACCCCCACCCCTCGGGCGACCCTTGCTGGGACTCCATCCGCTCAGCCGGTGGGCAAATCTCCCTATCCGACCTCCGCTTCCTCCACCGCCTCGGCGCCGGCGACATCGGCTCCGTCTTCCTCGCCGAGCTCAAATCCTCCCAATCAAACGACGCCGTATTCGCTGCTAAGGTGATGGACAAAAAGGAACTTGCTAGCCGTAATAAAGAAGGAAGGGCGAGGGTAGAAAGGGAAATTCTTGAAATGTTGGAACATCCTTTTTTGCCCACTCTCTATGCTTCCCTTGATTCCCCCAAATGGTCTTGTCTGCTCACCGAGTTCTGTCCCGGCGGCGACCTCCATGTTCTCCGGCAGCGGCAGCCCGGCAAGCGGTTCACTGAATCAGCCGTCAGGTTCTATGCATCAGAGGTGGTGGTGGCTCTAGAATATGTCCACATGATGGGCATAGTTTATCGCGATCTTAAGCCGGAAAACGTTTTAGTCCGATCAGACGGTCATATCATGCTCACGGATTTCGACCTATCTTTAAAATGTGACACGTCGACATCAACACCGGCCCAAGTAATCTCCAATAATAGTTCCACAGGCGCACCCCCGCAGGGTGATTATCATCTTGACCCACCCCCATTCACATCATCGTCGTGCATTTTACCTAGTTGTATAGTCCCAACCGTATCGTGTTTTCACCCTAAGCGTAGGCGAAAGAAGAAGCCAGGCCACCACAATGGACCAGAGTTTGTGGCCGAGCCGATTGATGTACGGTCCATGTCATTCGTTGGGACCCACGAATATCTGGCACCGGAGATTGTGTCCGGTGAGGGCCATGGTAGCCCCGTGGATTGGTGGACCTTAGGAATATTTATATTCGAATTATTTTATGGTGTGACCCCTTTTAGGGGAATGGATAATGAGTTAACCCTGGCTAATATTGTGGCTCGAGCCCTTGAGTTTCCAAAAGAGCCAACTTTGCCTAATACCGCTAAGGACTTGATATCTCAACTATTGGCTAAGGATCCGGAGAGGCGACTCGGGTCTACTATGGGTGCGACGGCGATCAAGCACCATCCATTCTTCCAAGGGGTCAGTTGGGCGCTTTTGAGATGTACATCGCCACCATTCAAGCCGCCTCCGTTTAATCGCGAGATCCTATCAGATGAGAGTTGCCCCGATACTCCGGTGGACTACTACTAG

Network for GWHGAAZE001093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	82	243	5.10E-33
PF00069.26	Pkinase	309	412	4.30E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.565
	SRR3591706	second leaf	3.412
	SRR3591707	mature leaf	7.804
	SRR3591708	Shoot apex	8.916
	SRR3591709	Stem	6.427
	SRR3591710	White floral bud	5.907
	SRR3591711	White flower	4.589
	SRR3591712	Green floral bud	10.458
	SRR3591713	Yellow flower	1.899
SRP173429	SRR8316895	Juvenile bud stage	8.967
	SRR8316896	Juvenile bud stage	9.328
	SRR8316897	Juvenile bud stage	3.762
	SRR8316894	Third green stage	3.544
	SRR8316900	Third green stage	9.393
	SRR8316901	Third green stage	8.268
	SRR8316898	Complete white stage	3.786
	SRR8316899	Complete white stage	18.395
	SRR8316903	Complete white stage	7.788
	SRR8316902	Silver flowering stage	2.812
	SRR8316904	Silver flowering stage	3.013
	SRR8316905	Silver flowering stage	1.274
	SRR8316906	Gold flowering stage	4.244
	SRR8316907	Gold flowering stage	5.138
	SRR8316908	Gold flowering stage	4.130
SRP132670	SRR6706286	Control	16.224
	SRR6706287	Light intensity 50%	12.473
	SRR6706288	Light intensity 20%	13.348
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.099
	CNS0095593	Slightly white alabastrum(diploid) 2	8.520
	CNS0095594	Slightly white alabastrum(diploid) 3	6.603
	CNS0095595	Whole white alabastrum(diploid) 2	7.991
	CNS0095596	Whole white alabastrum(diploid) 3	3.537
	CNS0095597	Whole white alabastrum(diploid) 4	4.752
	CNS0095598	Silvery flower (diploied) 1	7.590
	CNS0095599	Silvery flower (diploied) 2	10.118
	CNS0095600	Silvery flower (diploied) 3	6.371
	CNS0095601	Golden flower (diploid) 1	9.684
	CNS0095602	Golden flower (diploid) 2	9.650
	CNS0095603	Golden flower (diploid) 3	6.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.812
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.546
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.438
	CNS0095610	Silvery flower (tetraploid) 1	0.663
	CNS0095611	Silvery flower (tetraploid) 2	1.598
	CNS0095612	Silvery flower (tetraploid) 3	1.545
	CNS0095613	Golden flower (tetraploid) 1	0.144
	CNS0095614	Golden flower (tetraploid) 2	0.497
	CNS0095615	Golden flower (tetraploid) 3	0.753
CRA001975	CRR073297	Stem 1	13.031
	CRR073298	Stem 2	13.262
	CRR073299	Stem 3	14.825
	CRR073300	Leaf 1	14.155
	CRR073301	Leaf 2	13.976
	CRR073302	Leaf 3	15.016
	CRR073303	Juvenile bud 1	14.974
	CRR073304	Juvenile bud 2	8.651
	CRR073305	Juvenile bud 3	26.248
	CRR073306	Third green 1	12.138
	CRR073307	Third green 2	10.283
	CRR073308	Third green 3	13.249
	CRR073309	Second white 1	1.891
	CRR073310	Second white 2	1.240
	CRR073311	Second white 3	0.717
	CRR073312	Silver flowering 1	0.865
	CRR073313	Silver flowering 2	0.917
	CRR073314	Silver flowering 3	1.174
	CRR073315	Gold flowering 1	9.049
	CRR073316	Gold flowering 2	12.437
	CRR073317	Gold flowering 3	9.531
	CRR073318	Tawny withering 1	4.616
	CRR073319	Tawny withering 2	4.404
	CRR073320	Tawny withering 3	4.885